<div dir="ltr"><div>Hi Alex,<br><br>Thanks. I will make that my next step. Where in the mne code structure should I put this? I was thinking in under examples/datasets. <br><br></div><div>Alan<br></div></div><div class="gmail_extra">
<br><br><div class="gmail_quote">On Sat, May 24, 2014 at 5:43 AM, Alexandre Gramfort <span dir="ltr"><<a href="mailto:alexandre.gramfort@telecom-paristech.fr" target="_blank">alexandre.gramfort@telecom-paristech.fr</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">hi Alan,<br>
<br>
nice work !<br>
<br>
I have a few comments to make on the code so a PR on github would allow<br>
me to comment inline.<br>
<br>
Regarding the approach, it does what it is supposed to do in a pretty<br>
elegant way, but<br>
it is dangerous to only run the inverse method on such a tiny<br>
source space. An activation from the cortex would necessarily be projected<br>
to the amygdala. My hunch, is that an LCMV beamformer would suffer<br>
less from this.<br>
<br>
I think the next step would be to be able to combine a surface source space<br>
and the deep volume source space you create.<br>
<br>
best,<br>
Alex<br>
<div><div class="h5"><br>
<br>
On Sat, May 24, 2014 at 1:10 AM, Alan <<a href="mailto:leggitta3@gmail.com">leggitta3@gmail.com</a>> wrote:<br>
> Hello,<br>
><br>
> I worked through creating a discrete source space of the right amygdala and<br>
> performing dSPM source reconstruction in the SPM dataset. My code is<br>
> available on my GSoC blog.<br>
><br>
> <a href="http://misterbrainley.blogspot.com/2014/05/day-5-putting-it-together.html" target="_blank">http://misterbrainley.blogspot.com/2014/05/day-5-putting-it-together.html</a><br>
><br>
> I've attached a copy of the results for data filtered between 1-45 hz. The<br>
> grey region indicates statistical significance using an independent t-test<br>
> with fdr correction.<br>
><br>
> I would greatly appreciate any feedback you could offer.<br>
><br>
> Thanks!<br>
> Alan<br>
><br>
><br>
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