<html>
<head>
<meta content="text/html; charset=ISO-8859-1"
http-equiv="Content-Type">
</head>
<body bgcolor="#FFFFFF" text="#000000">
update: <br>
<br>
Using the --tif instead of the --png option works. --jpg also does
not work. I am not sure why this is the case, but using the .tif
files is a usable work-around. <br>
<br>
-Burke<br>
<br>
<br>
<div class="moz-cite-prefix">On 07/28/14 12:04, Burke Rosen wrote:<br>
</div>
<blockquote cite="mid:53D69EC6.4080209@ucsd.edu" type="cite">
<meta http-equiv="content-type" content="text/html;
charset=ISO-8859-1">
Hello, I am trying to save images with the following command:<br>
<br>
mne_make_movie \<br>
--pick 383 \<br>
--integ 100 \<br>
--subject fsaverage \<br>
--fthresh 0.08 \<br>
--fmid 0.11 \<br>
--fmax 0.17 \<br>
--stcin
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/stcfiles/SC_groupavg_group_a_cond_21_mean-ico7
\<br>
--png
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/pngfiles_nolabel/test_ip82_SC_cong_a_0.08_0.11_0.17_mean_275_375
\<br>
--view med \<br>
--rh \<br>
--qual 100 \<br>
--nocomments \<br>
--noscalebar \<br>
--snr 5 \<br>
--spm \<br>
--smooth 10<br>
<br>
When I run on my code on a centOS 5 machine it executes as
expected and produces the intended .png file. However, when I run
the same code on a centOS 6 machine, the output terminates with
"system : No such file or directory". Interestingly, an output
file <i>is</i> created with the correct name in the correct
directory, but this file is empty.<br>
<br>
It appear a similar issue was reported once before, though it was
not resolved (and the OS comparison not made):<br>
<a moz-do-not-send="true" class="moz-txt-link-freetext"
href="https://mail.nmr.mgh.harvard.edu/pipermail//mne_analysis/2012-December/001314.html">https://mail.nmr.mgh.harvard.edu/pipermail//mne_analysis/2012-December/001314.html</a><br>
<br>
Below is the centOS 5 and centOS 6 output.<br>
<br>
Thank you for your insight.<br>
<br>
-Burke<br>
<br>
<b>centOS5:</b><br>
mne_make_movie version 1.34 compiled at Dec 21 2009 19:48:23<br>
Create movies and tif, rgb, jpeg, png, or w files using a
precomputed inverse operator decomposition<br>
<br>
stc input file :
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/stcfiles/SC_groupavg_group_a_cond_21_mean-ico7<br>
PNG output :
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/pngfiles_nolabel/test_ip82_SC_cong_a_0.08_0.11_0.17_mean_275_375<br>
The input stc file will be assumed to
contain dSPM data<br>
Subject : fsaverage<br>
Visualization surface : inflated<br>
Process right hemisphere only<br>
Magnification factor : 1.00 <br>
Time integration : 100.0 ms<br>
Thresholding:<br>
fthresh : 0.08 <br>
fmid : 0.11 <br>
fslope : 16.67 <br>
fmax : 0.17 <br>
<br>
-------------------------------------------------------------------<br>
<br>
600 x 400 off-screen rendering initialized.<br>
Selected view called 'med'<br>
<br>
-------------------------------------------------------------------<br>
<br>
read stc file
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/stcfiles/SC_groupavg_group_a_cond_21_mean-ico7-lh.stc<br>
read stc file
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/stcfiles/SC_groupavg_group_a_cond_21_mean-ico7-rh.stc<br>
<br>
-------------------------------------------------------------------<br>
<br>
Loading inflated surfaces for subject fsaverage...<br>
<br>
Triangle file : created by nicks on Wed Aug 15 21:20:39 2007 nvert
= 163842 ntri = 327680<br>
Triangle and vertex normals and neighboring triangles...[done]<br>
Vertex neighbors...[done]<br>
Distances between neighboring vertices...[983040 distances
done]<br>
Triangle file : created by nicks on Wed Aug 15 21:20:57 2007 nvert
= 163842 ntri = 327680<br>
Triangle and vertex normals and neighboring triangles...[done]<br>
Vertex neighbors...[done]<br>
Distances between neighboring vertices...[983040 distances
done]<br>
<br>
-------------------------------------------------------------------<br>
<br>
Parameters set.<br>
<br>
-------------------------------------------------------------------<br>
<br>
No movie production requested.<br>
<br>
-------------------------------------------------------------------<br>
<br>
Some timeframes selected. Outputting png files (from stc files)<br>
<br>
dSPM at t = 383.0 ms...lh : -0.0202 .. 0.1664 ave = 0.03849 rh
: -0.02223 .. 0.1747 ave = 0.04297 <br>
produced png file
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/pngfiles_nolabel/test_ip82_SC_cong_a_0.08_0.11_0.17_mean_275_375-00383.0-med-rh.png<br>
<br>
-------------------------------------------------------------------<br>
<br>
No labels to process<br>
<br>
-------------------------------------------------------------------<br>
<br>
<br>
I think I responded favorably to all your requests. Good bye.<br>
<br>
<b>centOS6:<br>
</b>mne_make_movie version 1.34 compiled at Dec 21 2009 19:48:23<br>
Create movies and tif, rgb, jpeg, png, or w files using a
precomputed inverse operator decomposition<br>
<br>
stc input file :
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/stcfiles/SC_groupavg_group_a_cond_21_mean-ico7<br>
PNG output :
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/pngfiles_nolabel/test_ip50_SC_cong_a_0.08_0.11_0.17_mean_275_375<br>
The input stc file will be assumed to
contain dSPM data<br>
Subject : fsaverage<br>
Visualization surface : inflated<br>
Process right hemisphere only<br>
Magnification factor : 1.00 <br>
Time integration : 100.0 ms<br>
Thresholding:<br>
fthresh : 0.08 <br>
fmid : 0.11 <br>
fslope : 16.67 <br>
fmax : 0.17 <br>
<br>
-------------------------------------------------------------------<br>
<br>
600 x 400 off-screen rendering initialized.<br>
Selected view called 'med'<br>
<br>
-------------------------------------------------------------------<br>
<br>
read stc file
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/stcfiles/SC_groupavg_group_a_cond_21_mean-ico7-lh.stc<br>
read stc file
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/stcfiles/SC_groupavg_group_a_cond_21_mean-ico7-rh.stc<br>
<br>
-------------------------------------------------------------------<br>
<br>
Loading inflated surfaces for subject fsaverage...<br>
<br>
Triangle file : created by nicks on Wed Aug 15 21:20:39 2007 nvert
= 163842 ntri = 327680<br>
Triangle and vertex normals and neighboring triangles...[done]<br>
Vertex neighbors...[done]<br>
Distances between neighboring vertices...[983040 distances
done]<br>
Triangle file : created by nicks on Wed Aug 15 21:20:57 2007 nvert
= 163842 ntri = 327680<br>
Triangle and vertex normals and neighboring triangles...[done]<br>
Vertex neighbors...[done]<br>
Distances between neighboring vertices...[983040 distances
done]<br>
<br>
-------------------------------------------------------------------<br>
<br>
Parameters set.<br>
<br>
-------------------------------------------------------------------<br>
<br>
No movie production requested.<br>
<br>
-------------------------------------------------------------------<br>
<br>
Some timeframes selected. Outputting png files (from stc files)<br>
<br>
dSPM at t = 383.0 ms...lh : -0.0202 .. 0.1664 ave = 0.03849 rh
: -0.02223 .. 0.1747 ave = 0.04297 <br>
system : No such file or directory<br>
<br>
<br>
</blockquote>
<br>
</body>
</html>