+ export FREESURFER_HOME=/home/lysne/freesurfer + FREESURFER_HOME=/home/lysne/freesurfer + export MNE_ROOT=/home/lysne/MNE + MNE_ROOT=/home/lysne/MNE + export SUBJECTS_DIR=/media/lysne/3TB1/FaceEmotion.FS + SUBJECTS_DIR=/media/lysne/3TB1/FaceEmotion.FS + export SPACING=7 + SPACING=7 + cd /media/lysne/3TB1/FaceEmotion.FS + mne_setup_source_space --subject fsaverage1 --spacing 7 Setting up the source space with the following parameters: SUBJECTS_DIR = /media/lysne/3TB1/FaceEmotion.FS Subject = fsaverage1 Surface = white Grid spacing = 7 mm /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/fsaverage1-7-src.fif already exists. Use the --overwrite option to recreate it + mne_setup_forward_model --subject fsaverage1 --homog --surf Setting up the BEM with the following parameters: SUBJECTS_DIR = /media/lysne/3TB1/FaceEmotion.FS Subject = fsaverage1 Inner skull = /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/inner_skull.surf (20480 triangles) brain conductivity = 0.3 S/m Resulting BEM = /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/fsaverage1-20480-bem.fif >> 1. Creating the BEM geometry file... mne_surf2bem version 1.8 compiled at Jan 28 2015 06:02:25 input file # 1 : /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/inner_skull.surf / id = 1 / sigma = 0.3 S/m output file : /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/fsaverage1-20480-bem.fif Triangle file : mne_list_bem output nvert = 10242 ntri = 20480 Triangle and vertex normals and neighboring triangles...[done] Vertex neighbors...[done] Distances between neighboring vertices...[61440 distances done] /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/inner_skull.surf read. id = 1 inner skull CM is -0.53 -21.09 6.20 mm Surfaces passed the basic topology checks. /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/fsaverage1-20480-bem.fif written. >> 2. Creating FreeSurfer surface files of the actual surfaces... mne_list_bem version 1.9 compiled at Jan 28 2015 06:03:34 input file : /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/fsaverage1-20480-bem.fif output file : /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/fsaverage1-inner_skull-20480.surf surface id : 1 output in FreeSurfer format. done. /home/lysne/MNE/bin/mne_setup_forward_model: 430: [: -a: unexpected operator >> 3. Calculating BEM geometry data (this takes several minutes)... mne_prepare_bem_model version 1.2 compiled at Jan 28 2015 05:56:58 BEM surface file : /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/fsaverage1-20480-bem.fif Solution file : /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/fsaverage1-20480-bem-sol.fif Approximation method : linear collocation Loading surfaces... Triangle normals and neighboring triangles...[done] Vertex neighbors...[done] Distances between neighboring vertices...[61440 distances done] Homogeneous model surface loaded. Computing the linear collocation solution... Matrix coefficients... inner skull (10242) -> inner skull (10242) ... [done] Inverting the coefficient matrix... LU factorization... Compute inverse... Solution ready. Saving... Saved the result to /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/fsaverage1-20480-bem-sol.fif BEM geometry computations complete. The model /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/fsaverage1-20480-bem-sol.fif is now ready for use Complete. + mne_do_forward_solution --subject fsaverage1 --spacing 7 --mricoord --fixed --megonly --overwrite --meas /media/lysne/3TB1/FaceEmotion.EMF/M87117720.20070711/M87117720_faces.filt.decim.cat.proj.mneave.fif --fwd fsaverage1.fwd.fif --mri /media/lysne/3TB1/FaceEmotion.FS/fsaverage/mri/T1-neuromag/sets/COR-lysne-150202-102520.fif mne_forward_solution --meg --accurate --src /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/fsaverage1-7-src.fif --meas /media/lysne/3TB1/FaceEmotion.EMF/M87117720.20070711/M87117720_faces.filt.decim.cat.proj.mneave.fif --fwd fsaverage1.fwd.fif --fixed --mricoord --bem /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/fsaverage1-20480-bem.fif --mindist 0.0 --mri /media/lysne/3TB1/FaceEmotion.FS/fsaverage/mri/T1-neuromag/sets/COR-lysne-150202-102520.fif mne_forward_solution version 2.10 compiled at Jan 28 2015 05:56:45 Source space : /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/fsaverage1-7-src.fif MRI -> head transform source : /media/lysne/3TB1/FaceEmotion.FS/fsaverage/mri/T1-neuromag/sets/COR-lysne-150202-102520.fif Measurement data : /media/lysne/3TB1/FaceEmotion.EMF/M87117720.20070711/M87117720_faces.filt.decim.cat.proj.mneave.fif BEM model : /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/fsaverage1-20480-bem.fif Accurate field computations Do computations in MRI (surface RAS) coordinates. Fixed source orientations Destination for the solution : fsaverage1.fwd.fif Reading /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/fsaverage1-7-src.fif... Read 2 source spaces a total of 20484 active source locations Coordinate transformation: MRI (surface RAS) -> head 0.988282 0.094173 0.120127 -0.05 mm -0.098186 0.994776 0.027923 3.74 mm -0.116869 -0.039391 0.992366 46.54 mm 0.000000 0.000000 0.000000 1.00 Read 273 MEG channels from /media/lysne/3TB1/FaceEmotion.EMF/M87117720.20070711/M87117720_faces.filt.decim.cat.proj.mneave.fif Read 29 MEG compensation channels from /media/lysne/3TB1/FaceEmotion.EMF/M87117720.20070711/M87117720_faces.filt.decim.cat.proj.mneave.fif Read 7 EEG channels from /media/lysne/3TB1/FaceEmotion.EMF/M87117720.20070711/M87117720_faces.filt.decim.cat.proj.mneave.fif Coordinate transformation: MEG device -> head 0.999052 -0.017296 0.039956 3.35 mm 0.011121 0.988640 0.149889 4.86 mm -0.042095 -0.149302 0.987895 66.98 mm 0.000000 0.000000 0.000000 1.00 EEG not requested. EEG channels omitted. 69 coil definitions read 5 compensation data sets in /media/lysne/3TB1/FaceEmotion.EMF/M87117720.20070711/M87117720_faces.filt.decim.cat.proj.mneave.fif MRI coordinate coil definitions created. Source spaces are now in MRI (surface RAS) coordinates. Setting up the BEM model using /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/fsaverage1-20480-bem-sol.fif... Loading surfaces... Triangle normals and neighboring triangles...[done] Vertex neighbors...[done] Distances between neighboring vertices...[61440 distances done] Homogeneous model surface loaded. Loading the solution matrix... Loaded linear collocation BEM solution from /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/fsaverage1-20480-bem-sol.fif BEM model /media/lysne/3TB1/FaceEmotion.FS/fsaverage1/bem/fsaverage1-20480-bem-sol.fif is now set up Source spaces are in MRI coordinates. Checking that the sources are inside the inner skull (will take a few...) Thank you for waiting. Setting up compensation data... 273 out of 273 channels have the compensation set. Desired compensation data (third order gradiometer) found. All compensation channels found. Preselector created. Compensation data matrix created. Postselector created. Compensation set up. Composing the field computation matrix...[done] Composing the field computation matrix (compensation coils)...[done] 8 processors. I will use one thread for each of the 2 source spaces. Computing MEG at 20484 source locations (fixed orientations)...done. writing fsaverage1.fwd.fif...done Finished.