Sorry I followed up directly but forgot to relay it back here. I made pull request to fix this behavior. If you would like to follow along the process, you can do so here: <a href="https://github.com/mne-tools/mne-python/pull/3015">https://github.com/mne-tools/mne-python/pull/3015</a><br><div class="gmail_quote"><div dir="ltr">On Thu, Mar 17, 2016 at 10:50 Cushing, Cody <<a href="mailto:CCUSHING1@mgh.harvard.edu">CCUSHING1@mgh.harvard.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div>
<div style="direction:ltr;font-family:Tahoma;color:#000000;font-size:10pt">Hi all,<br>
<br>
Was any resolution ever found on this? I'm now experiencing the same thing where trying to multiple merge_events before epoching results in an obscene amount of trial counts per condition (e.g. my condition 1 nave goes from 69 > 228), so I believe my problem
to identical to Lucy's below. Thanks for any help or input.<br>
<br>
Cheers,<br>
Cody<br>
<div style="font-family:Times New Roman;color:#000000;font-size:16px">
<hr>
<div style="direction:ltr"><font face="Tahoma" color="#000000" size="2"><b>From:</b> <a href="mailto:mne_analysis-bounces@nmr.mgh.harvard.edu" target="_blank">mne_analysis-bounces@nmr.mgh.harvard.edu</a> [<a href="mailto:mne_analysis-bounces@nmr.mgh.harvard.edu" target="_blank">mne_analysis-bounces@nmr.mgh.harvard.edu</a>] on behalf of Teon Brooks [<a href="mailto:teon.brooks@gmail.com" target="_blank">teon.brooks@gmail.com</a>]<br>
<b>Sent:</b> Wednesday, February 24, 2016 8:00 PM</font></div></div></div></div><div><div style="direction:ltr;font-family:Tahoma;color:#000000;font-size:10pt"><div style="font-family:Times New Roman;color:#000000;font-size:16px"><div style="direction:ltr"><font face="Tahoma" color="#000000" size="2"><br>
<b>To:</b> Discussion and support forum for the users of MNE Software<br>
<b>Subject:</b> Re: [Mne_analysis] merge/combine events MNE Python<br>
</font></div></div></div></div><div><div style="direction:ltr;font-family:Tahoma;color:#000000;font-size:10pt"><div style="font-family:Times New Roman;color:#000000;font-size:16px">
<div></div>
<div>Could you send directly me the code you used and a sample file to reproduce this problem? From what I read, I can't reproduce it with the sample data.
<br>
<div class="gmail_quote">
<div dir="ltr">On Thu, Feb 18, 2016 at 11:51 Lucy MacGregor <<a href="mailto:Lucy.MacGregor@mrc-cbu.cam.ac.uk" target="_blank">Lucy.MacGregor@mrc-cbu.cam.ac.uk</a>> wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div lang="EN-GB">
<div>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d">Hi Teon,<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d">Thank you. Your suggestion is what I’d originally hoped to do but I would like *<b>multiple</b>* new combinations (e.g., condE(11,12) *<b>and</b>* condF(13,14))
and I couldn’t figure out how I could use the function to do this to create a list of the events.</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d">Initially I did:<u></u><u></u></span></p>
</div>
</div>
<div lang="EN-GB">
<div>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif"">events=mne.event.merge_events(events, [11,12], 1112, replace_events=False)</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif"">events=mne.event.merge_events(events, [13,14], 1314 replace_events=False)</span><u></u><u></u></p>
</div>
</div>
<div lang="EN-GB">
<div>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d">In doing mne.event.merge_events the second time, at a given sample point the original and new event codes are repeated twice (event codes not included in recombinations
are repeated 4 times).<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d">Best,<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d">Lucy<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" lang="EN-US">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" lang="EN-US">
<a href="mailto:mne_analysis-bounces@nmr.mgh.harvard.edu" target="_blank">mne_analysis-bounces@nmr.mgh.harvard.edu</a> [mailto:<a href="mailto:mne_analysis-bounces@nmr.mgh.harvard.edu" target="_blank">mne_analysis-bounces@nmr.mgh.harvard.edu</a>]
<b>On Behalf Of </b>Teon Brooks<br>
<b>Sent:</b> 18 February 2016 16:11</span></p>
</div>
</div>
<div lang="EN-GB">
<div>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" lang="EN-US"><br>
<b>To:</b> Discussion and support forum for the users of MNE Software<br>
<b>Subject:</b> Re: [Mne_analysis] merge/combine events MNE Python<u></u><u></u></span></p>
</div>
</div>
<div lang="EN-GB">
<div>
<p class="MsoNormal"><u></u> <u></u></p>
<div>
<p class="MsoNormal">Hi Lucy,<br>
<br>
This might help, there's a argument with merge_events named 'replace_events' that allows you to retain the original values when set to False. In your example, you could combine 11 and 12 and assign to a value like 99. In your event_id dict, you could then assign
CondE to 99. <br>
<br>
HTH,<u></u><u></u></p>
</div>
<p class="MsoNormal"><u></u> <u></u></p>
<div>
<div>
<p class="MsoNormal">On Thu, Feb 18, 2016 at 09:52 Lucy MacGregor <<a href="mailto:Lucy.MacGregor@mrc-cbu.cam.ac.uk" target="_blank">Lucy.MacGregor@mrc-cbu.cam.ac.uk</a>> wrote:<u></u><u></u></p>
</div>
<blockquote style="border:none;border-left:solid #cccccc 1.0pt;padding:0cm 0cm 0cm 6.0pt;margin-left:4.8pt;margin-right:0cm">
<div>
<div>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d">Dear Natalie,</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d"> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d">Thank you for the suggestion. My understanding of mne.epochs.combine_event_ids is that it replaces the original events with new ones whereas I would like to
retain the original events which is why I initially tried mne.event.merge_events.</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d"> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d">I can now do what I want to do using Mainak’s suggestion to use the hierarchical feature of epoch selection. I created multiple evoked files corresponding
to my various event combinations then saved the combinations into one file using mne.write_evokeds.</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d"> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d"> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d">Thank you both!</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d"> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d">Best,</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d"> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d">Lucy</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d"> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d"> </span><u></u><u></u></p>
<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" lang="EN-US">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" lang="EN-US">
<a href="mailto:mne_analysis-bounces@nmr.mgh.harvard.edu" target="_blank">mne_analysis-bounces@nmr.mgh.harvard.edu</a> [mailto:<a href="mailto:mne_analysis-bounces@nmr.mgh.harvard.edu" target="_blank">mne_analysis-bounces@nmr.mgh.harvard.edu</a>]
<b>On Behalf Of </b>Natalie Klein<br>
<b>Sent:</b> 18 February 2016 13:02</span><u></u><u></u></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" lang="EN-US"><br>
<b>To:</b> Discussion and support forum for the users of MNE Software<br>
<b>Subject:</b> Re: [Mne_analysis] merge/combine events MNE Python</span><u></u><u></u></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal"> <u></u><u></u></p>
<div>
<p class="MsoNormal">Dear Lucy,<u></u><u></u></p>
<div>
<p class="MsoNormal"> <u></u><u></u></p>
</div>
<div>
<p class="MsoNormal">Maybe I misunderstand what you are trying to do, but it seems like mne.epochs.combine_event_ids might be helpful. I'm not sure what you mean about saving them all into one file but you could define new event ids to combine epochs across
conditions then create evoked files from those. <u></u><u></u></p>
</div>
</div>
<div>
<p class="MsoNormal"> <u></u><u></u></p>
<div>
<p class="MsoNormal">On Thu, Feb 18, 2016 at 7:45 AM, Lucy MacGregor <<a href="mailto:Lucy.MacGregor@mrc-cbu.cam.ac.uk" target="_blank">Lucy.MacGregor@mrc-cbu.cam.ac.uk</a>> wrote:<u></u><u></u></p>
<div>
<div>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d">Dear Mainak,</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d"> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d">Many thanks for the reply and the pointer. This seems helpful to access different combinations of the events, but is it then possible to create multiple new
epoch objects (condE and condF) which can be then saved together in a single evoked file along with the originals? Ideally I would have the event/condition averages for all conditions (new and old) in one file.</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d"> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d">Best,</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d"> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d">Lucy</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#1f497d"> </span><u></u><u></u></p>
<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" lang="EN-US">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" lang="EN-US">
<a href="mailto:mne_analysis-bounces@nmr.mgh.harvard.edu" target="_blank">mne_analysis-bounces@nmr.mgh.harvard.edu</a> [mailto:<a href="mailto:mne_analysis-bounces@nmr.mgh.harvard.edu" target="_blank">mne_analysis-bounces@nmr.mgh.harvard.edu</a>]
<b>On Behalf Of </b>Mainak Jas<br>
<b>Sent:</b> 18 February 2016 10:22<br>
<b>To:</b> Discussion and support forum for the users of MNE Software<br>
<b>Subject:</b> Re: [Mne_analysis] merge/combine events MNE Python</span><u></u><u></u></p>
<div>
<div>
<p class="MsoNormal"> <u></u><u></u></p>
<div>
<div>
<div>
<p class="MsoNormal" style="margin-bottom:12.0pt">Dear Lucy,<u></u><u></u></p>
</div>
<p class="MsoNormal" style="margin-bottom:12.0pt">It seems what you want to do is to use the hierarchical epochs selection. If you have an epochs object which contains condA, condB, condC and condD, you can get epochs of condE by simply using epochs['condA',
'condB']. Please take a look at the MNE reference API for the epochs object: <a href="http://martinos.org/mne/stable/generated/mne.Epochs.html#mne.Epochs" target="_blank">
http://martinos.org/mne/stable/generated/mne.Epochs.html#mne.Epochs</a> (look at the Notes section). Does this solve your problem?<u></u><u></u></p>
</div>
<div>
<p class="MsoNormal">Best regards,<u></u><u></u></p>
</div>
<div>
<p class="MsoNormal">Mainak<u></u><u></u></p>
</div>
</div>
<div>
<p class="MsoNormal"> <u></u><u></u></p>
<div>
<p class="MsoNormal">On Thu, Feb 18, 2016 at 10:27 AM, Lucy MacGregor <<a href="mailto:Lucy.MacGregor@mrc-cbu.cam.ac.uk" target="_blank">Lucy.MacGregor@mrc-cbu.cam.ac.uk</a>> wrote:<u></u><u></u></p>
<div>
<div>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif"">Dear MNE Python users,</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif""> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif""> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif"">I would like to combine event codes to create a number of new events whilst retaining the originals. E.g.,</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif""> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif"">CondA = 11</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif"">CondB = 12</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif"">CondC = 13</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif"">CondD = 14</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif"">CondE = 11,12</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif"">CondF = 13,14</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif""> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif""> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif"">Is there a straightforward way to do this? I have seen this thread</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif""> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif""><a href="https://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/2013-April/001498.html" target="_blank">https://mail.nmr.mgh.harvard.edu/pipermail//mne_analysis/2013-April/001498.html</a></span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif""> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif""> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif"">Using mne.event.merge_events works fine when I was just creating one new event (as does the alternative method of combining events at the evoked stage) but I’m unsure of
the most sensible way to proceed given I want to create multiple new events. I originally did this:</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif""> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif"">events=mne.event.merge_events(events, [11,12], 1112, replace_events=False)</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif"">events=mne.event.merge_events(events, [13,14], 1314 replace_events=False)</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif""> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif"">but then, because I’m not replacing events, I end up with multiple copies of all events (even those not included in the merge_events function) at a given sample point, which
isn’t ideal.</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif""> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif"">As a new MNE Python user (I previously used MNE) I would be grateful for any advice as the best way to do this.</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif""> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif""> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif"">Thank you,</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif""> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif"">Lucy MacGregor</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif""> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif""> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#a6a6a6">******************************************************************</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#a6a6a6">Lucy MacGregor</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#a6a6a6">MRC Cognition and Brain Sciences Unit</span><u></u><u></u></p>
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";color:#a6a6a6">Tel: 01223 355294 Ext 860</span><u></u><u></u></p>
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<p class="MsoNormal">teon<br>
--<br>
Envoyé de mon iPhone <u></u><u></u></p>
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_______________________________________________<br>
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The information in this e-mail is intended only for the person to whom it is<br>
addressed. If you believe this e-mail was sent to you in error and the e-mail<br>
contains patient information, please contact the Partners Compliance HelpLine at<br>
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but does not contain patient information, please contact the sender and properly<br>
dispose of the e-mail.<br>
</blockquote>
</div>
<div dir="ltr">-- <br>
</div>
teon<br>
--<br>
Envoyé de mon iPhone </div>
</div></div></div>
_______________________________________________<br>
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The information in this e-mail is intended only for the person to whom it is<br>
addressed. If you believe this e-mail was sent to you in error and the e-mail<br>
contains patient information, please contact the Partners Compliance HelpLine at<br>
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but does not contain patient information, please contact the sender and properly<br>
dispose of the e-mail.<br>
</blockquote></div><div dir="ltr">-- <br></div><div dir="ltr">teon<br>--<br>Envoyé de mon iPhone</div>