<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class="">Congratulations for a great job! Sheraz and Chris will present the Martinos Center in New York this week. </div><div class=""><br class=""></div><div class="">Best,</div><div class="">Matti</div><br class=""><div><blockquote type="cite" class=""><div class="">On Mar 24, 2017, at 7:02 AM, Alexandre Gramfort <<a href="mailto:alexandre.gramfort@telecom-paristech.fr" class="">alexandre.gramfort@telecom-paristech.fr</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class="">thx<div class=""><br class=""></div><div class="">see you buddy !</div><div class=""><br class=""></div><div class="">A</div></div><div class="gmail_extra"><br class=""><div class="gmail_quote">On Fri, Mar 24, 2017 at 11:55 AM, Sheraz Khan, PhD <span dir="ltr" class=""><<a href="mailto:sheraz@nmr.mgh.harvard.edu" target="_blank" class="">sheraz@nmr.mgh.harvard.edu</a>></span> wrote:<br class=""><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Buddy,<br class="">
<br class="">
Wonderful work, you guys truly rocks!!!!!<br class="">
<br class="">
See you in NYC on Monday.<br class="">
<br class="">
Best,<br class="">
<br class="">
Sheraz<br class="">
<span class=""><br class="">
<br class="">
> Hi,<br class="">
><br class="">
> We are pleased to announce the new 0.14 release of MNE-Python. As usual<br class="">
> this release comes with new features, bug fixes, and many improvements to<br class="">
> usability, visualization, and documentation.<br class="">
><br class="">
> A few highlights<br class="">
><br class="">
> ============<br class="">
><br class="">
</span>> -<br class="">
<span class="">><br class="">
> We have added I/O support for Artemis123<br class="">
</span>> <<a href="http://martinos.org/mne/stable/generated/mne.io.read_raw_artemis123.html" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/generated/mne.io.read_<wbr class="">raw_artemis123.html</a>><br class="">
> infant/toddler MEG data<br class="">
> -<br class="">
<span class="">><br class="">
> We no longer require MNE-C for BEM and scalp processing steps<br class="">
</span>> -<br class="">
><br class="">
> Interactive annotation<br class="">
> <<a href="http://martinos.org/mne/stable/generated/mne.Annotations.html" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/generated/mne.<wbr class="">Annotations.html</a>> mode is<br class="">
<span class="">> now available in raw plotting<br class="">
</span>> -<br class="">
<span class="">><br class="">
> Dipole locations can now be visualized with MRI slice overlay<br class="">
</span>> <<a href="http://martinos.org/mne/stable/auto_tutorials/plot_dipole_fit.html" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/auto_tutorials/plot_<wbr class="">dipole_fit.html</a>><br class="">
> -<br class="">
<span class="">><br class="">
> Add minimum-phase filtering option in mne.io.Raw.filter()<br class="">
</span>> <<a href="http://martinos.org/mne/stable/generated/mne.io.Raw.html#mne.io.Raw.filter" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/generated/mne.io.Raw.<wbr class="">html#mne.io.Raw.filter</a>><br class="">
> -<br class="">
><br class="">
> New mne.datasets.visual_92_<wbr class="">categories<br class="">
> <<a href="http://martinos.org/mne/stable/python_reference.html#module-mne.datasets.visual_92_categories" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/python_reference.html#<wbr class="">module-mne.datasets.visual_92_<wbr class="">categories</a>><br class="">
<span class="">> dataset with an example of Representational Similarity Analysis (RSA)<br class="">
</span>> <<a href="http://martinos.org/mne/stable/auto_examples/decoding/decoding_rsa.html#sphx-glr-auto-examples-decoding-decoding-rsa-py" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/auto_examples/decoding/<wbr class="">decoding_rsa.html#sphx-glr-<wbr class="">auto-examples-decoding-<wbr class="">decoding-rsa-py</a>><br class="">
><br class="">
><br class="">
> Notable API changes<br class="">
><br class="">
> ================<br class="">
><br class="">
> -<br class="">
<span class="">><br class="">
> Fix bug with DICS and LCMV (functions mne.beamformer.lcmv<br class="">
</span>> <<a href="http://martinos.org/mne/stable/generated/mne.beamformer.lcmv.html" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/generated/mne.<wbr class="">beamformer.lcmv.html</a>> and<br class="">
> mne.beamformer.dics<br class="">
> <<a href="http://martinos.org/mne/stable/generated/mne.beamformer.dics.html" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/generated/mne.<wbr class="">beamformer.dics.html</a>>)<br class="">
<span class="">> where regularization was done improperly. The default reg=0.01 has been<br class="">
> changed to reg=0.05<br class="">
</span>> -<br class="">
<span class="">><br class="">
> The filtering functions band_pass_filter, band_stop_filter,<br class="">
> low_pass_filter, and high_pass_filter have been deprecated in favor of<br class="">
> mne.filter.filter_data<br class="">
</span>> <<a href="http://martinos.org/mne/stable/generated/mne.filter.filter_data.html" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/generated/mne.filter.<wbr class="">filter_data.html</a>><br class="">
> -<br class="">
><br class="">
> mne.decoding.Scaler<br class="">
> <<a href="http://martinos.org/mne/stable/generated/mne.decoding.Scaler.html" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/generated/mne.decoding.<wbr class="">Scaler.html</a>> now<br class="">
<span class="">> scales each channel independently using data from all time points<br class="">
> (epochs<br class="">
> and times) instead of scaling all channels for each time point. It also<br class="">
> now<br class="">
> accepts parameter scalings to determine the data scaling method<br class="">
> (default is<br class="">
> None to use static channel-type-based scaling)<br class="">
</span>> -<br class="">
<span class="">><br class="">
> The default tmax=60. In mne.io.Raw.plot_psd<br class="">
</span>> <<a href="http://martinos.org/mne/stable/generated/mne.io.Raw.html?highlight=plot_psd#mne.io.Raw.plot_psd" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/generated/mne.io.Raw.<wbr class="">html?highlight=plot_psd#mne.<wbr class="">io.Raw.plot_psd</a>><br class="">
<span class="">> will change to tmax=np.inf in 0.15<br class="">
</span>> -<br class="">
><br class="">
> The mne.decoding.LinearModel<br class="">
> <<a href="http://martinos.org/mne/stable/generated/mne.decoding.LinearModel.html#mne.decoding.LinearModel" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/generated/mne.decoding.<wbr class="">LinearModel.html#mne.decoding.<wbr class="">LinearModel</a>><br class="">
<span class="">> class will no longer support plot_filters and plot_patterns, use<br class="">
> mne.EvokedArray<br class="">
</span>> <<a href="http://martinos.org/mne/stable/generated/mne.EvokedArray.html" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/generated/mne.<wbr class="">EvokedArray.html</a>> with<br class="">
> mne.decoding.get_coef<br class="">
> <<a href="http://martinos.org/mne/stable/generated/mne.decoding.get_coef.html" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/generated/mne.decoding.<wbr class="">get_coef.html</a>><br class="">
> instead<br class="">
> -<br class="">
><br class="">
> Made functions mne.time_frequency.tfr_array_<wbr class="">multitaper<br class="">
> <<a href="http://martinos.org/mne/stable/generated/mne.time_frequency.tfr_array_multitaper.html" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/generated/mne.time_<wbr class="">frequency.tfr_array_<wbr class="">multitaper.html</a>>,<br class="">
> mne.time_frequency.tfr_array_<wbr class="">morlet<br class="">
> <<a href="http://martinos.org/mne/stable/generated/mne.time_frequency.tfr_array_morlet.html" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/generated/mne.time_<wbr class="">frequency.tfr_array_morlet.<wbr class="">html</a>>,<br class="">
> mne.time_frequency.tfr_array_<wbr class="">stockwell<br class="">
> <<a href="http://martinos.org/mne/stable/generated/mne.time_frequency.tfr_array_stockwell.html" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/generated/mne.time_<wbr class="">frequency.tfr_array_stockwell.<wbr class="">html</a>>,<br class="">
> mne.time_frequency.psd_array_<wbr class="">multitaper<br class="">
> <<a href="http://martinos.org/mne/stable/generated/mne.time_frequency.psd_array_multitaper.html" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/generated/mne.time_<wbr class="">frequency.psd_array_<wbr class="">multitaper.html</a>><br class="">
> and mne.time_frequency.psd_array_<wbr class="">welch<br class="">
> <<a href="http://martinos.org/mne/stable/generated/mne.time_frequency.psd_array_welch.html" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/generated/mne.time_<wbr class="">frequency.psd_array_welch.html</a><wbr class="">><br class="">
<span class="">> public to allow computing TFRs and PSDs on numpy arrays<br class="">
</span>> -<br class="">
><br class="">
> mne.preprocessing.ICA.fit<br class="">
> <<a href="http://martinos.org/mne/stable/generated/mne.preprocessing.ICA.html#mne.preprocessing.ICA.fit" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/generated/mne.<wbr class="">preprocessing.ICA.html#mne.<wbr class="">preprocessing.ICA.fit</a>><br class="">
<span class="">> now rejects data annotated bad by default when working with Raw.<br class="">
><br class="">
><br class="">
> For a full list of improvements and API changes, see:<br class="">
><br class="">
> <a href="http://martinos.org/mne/stable/whats_new.html#version-0-14" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/whats_new.html#version-<wbr class="">0-14</a><br class="">
><br class="">
> To install the latest release the following command should do the job:<br class="">
><br class="">
> pip install --upgrade --user mne<br class="">
><br class="">
> As usual we welcome your bug reports, feature requests, critiques, and<br class="">
><br class="">
> contributions.<br class="">
><br class="">
> Some links:<br class="">
><br class="">
> - <a href="https://github.com/mne-tools/mne-python" rel="noreferrer" target="_blank" class="">https://github.com/mne-tools/<wbr class="">mne-python</a> (code + readme on how to<br class="">
> install)<br class="">
><br class="">
> - <a href="http://martinos.org/mne/stable/" rel="noreferrer" target="_blank" class="">http://martinos.org/mne/<wbr class="">stable/</a> (full MNE documentation)<br class="">
><br class="">
> Follow us on Twitter: <a href="https://twitter.com/mne_python" rel="noreferrer" target="_blank" class="">https://twitter.com/mne_python</a><br class="">
><br class="">
> Regards,<br class="">
><br class="">
> The MNE-Python developers<br class="">
><br class="">
> People who contributed to this release (in alphabetical order):<br class="">
><br class="">
> * Alexander Rudiuk<br class="">
><br class="">
> * Alexandre Gramfort<br class="">
><br class="">
> * Annalisa Pascarella<br class="">
><br class="">
> * Antti Rantala<br class="">
><br class="">
> * Asish Panda<br class="">
><br class="">
> * Burkhard Maess<br class="">
><br class="">
> * Chris Holdgraf<br class="">
><br class="">
> * Christian Brodbeck<br class="">
><br class="">
</span>> * Cristóbal Moënne-Loccoz<br class="">
<span class="">><br class="">
> * Daniel McCloy<br class="">
><br class="">
> * Denis A. Engemann<br class="">
><br class="">
> * Eric Larson<br class="">
><br class="">
> * Erkka Heinila<br class="">
><br class="">
> * Hermann Sonntag<br class="">
><br class="">
> * Jaakko Leppakangas<br class="">
><br class="">
> * Jakub Kaczmarzyk<br class="">
><br class="">
> * Jean-Remi King<br class="">
><br class="">
> * Jon Houck<br class="">
><br class="">
> * Jona Sassenhagen<br class="">
><br class="">
> * Jussi Nurminen<br class="">
><br class="">
> * Keith Doelling<br class="">
><br class="">
> * Leonardo S. Barbosa<br class="">
><br class="">
> * Lorenz Esch<br class="">
><br class="">
> * Lorenzo Alfine<br class="">
><br class="">
> * Luke Bloy<br class="">
><br class="">
> * Mainak Jas<br class="">
><br class="">
> * Marijn van Vliet<br class="">
><br class="">
> * Matt Boggess<br class="">
><br class="">
> * Matteo Visconti<br class="">
><br class="">
> * Mikolaj Magnuski<br class="">
><br class="">
> * Niklas Wilming<br class="">
><br class="">
> * Paul Pasler<br class="">
><br class="">
</span>> * Richard Höchenberger<br class="">
<span class="">><br class="">
> * Sheraz Khan<br class="">
><br class="">
> * Stefan Repplinger<br class="">
><br class="">
> * Teon Brooks<br class="">
><br class="">
> * Yaroslav Halchenko<br class="">
</span>> ______________________________<wbr class="">_________________<br class="">
> Mne_analysis mailing list<br class="">
> <a href="mailto:Mne_analysis@nmr.mgh.harvard.edu" class="">Mne_analysis@nmr.mgh.harvard.<wbr class="">edu</a><br class="">
> <a href="https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis" rel="noreferrer" target="_blank" class="">https://mail.nmr.mgh.harvard.<wbr class="">edu/mailman/listinfo/mne_<wbr class="">analysis</a><br class="">
<br class="">
<br class="">
-------------------------<br class="">
Sheraz Khan, M.Eng, Ph.D.<br class="">
Instructor in Neurology<br class="">
<br class="">
Athinoula A. Martinos Center for Biomedical Imaging<br class="">
Massachusetts General Hospital<br class="">
Harvard Medical School<br class="">
<br class="">
McGovern Institute for Brain Research<br class="">
Massachusetts Institute of Technology<br class="">
<br class="">
Tel: <a href="tel:%2B1%20617-643-5634" value="+16176435634" class="">+1 617-643-5634</a><br class="">
Fax: <a href="tel:%2B1%20617-948-5966" value="+16179485966" class="">+1 617-948-5966</a><br class="">
Email: <a href="mailto:sheraz@nmr.mgh.harvard.edu" class="">sheraz@nmr.mgh.harvard.edu</a><br class="">
<a href="mailto:sheraz@mit.edu" class="">sheraz@mit.edu</a><br class="">
Web: <a href="http://sheraz.mit.edu/" rel="noreferrer" target="_blank" class="">http://sheraz.mit.edu</a><br class="">
______________________________<wbr class="">_________________<br class="">
Mne_analysis mailing list<br class="">
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<br class="">
The information in this e-mail is intended only for the person to whom it is<br class="">
addressed. If you believe this e-mail was sent to you in error and the e-mail<br class="">
contains patient information, please contact the Partners Compliance HelpLine at<br class="">
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