<html><head></head><body><div style="color:#000; background-color:#fff; font-family:Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:13px"><div><span>Hi Eric, </span></div><div><span><br></span></div><div id="yui_3_16_0_ym19_1_1507126334566_142762"><span>Thanks for your response. </span></div><div id="yui_3_16_0_ym19_1_1507126334566_142761"><span id="yui_3_16_0_ym19_1_1507126334566_142760">Could you please give me the detail information about 'plot-alignment'? How to use that function, etc. Also, where I can find the argument for "vector' modes in 'apply_inverse'.</span></div><div id="yui_3_16_0_ym19_1_1507126334566_142761"><br></div><div id="yui_3_16_0_ym19_1_1507126334566_142761">Thanks!</div><div id="yui_3_16_0_ym19_1_1507126334566_142761"><br></div><div id="yui_3_16_0_ym19_1_1507126334566_142761">Hendrik </div><div class="qtdSeparateBR" id="yui_3_16_0_ym19_1_1507126334566_142759"><br><br></div><div class="yahoo_quoted" id="yui_3_16_0_ym19_1_1507126334566_142729" style="display: block;"> <div style="font-family: Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 13px;" id="yui_3_16_0_ym19_1_1507126334566_142728"> <div style="font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;" id="yui_3_16_0_ym19_1_1507126334566_142727"> <div dir="ltr" id="yui_3_16_0_ym19_1_1507126334566_142726"> <font size="2" face="Arial" id="yui_3_16_0_ym19_1_1507126334566_142725"> <hr size="1"> <b><span style="font-weight:bold;">From:</span></b> Eric Larson <larson.eric.d@gmail.com><br> <b><span style="font-weight: bold;">To:</span></b> Hendrik Santosa <hendrik_santosa@yahoo.com>; Discussion and support forum for the users of MNE Software <mne_analysis@nmr.mgh.harvard.edu> <br> <b><span style="font-weight: bold;">Sent:</span></b> Wednesday, October 4, 2017 8:17 PM<br> <b><span style="font-weight: bold;">Subject:</span></b> Re: [Mne_analysis] MNE processing (to get *stc file)<br> </font> </div> <div class="y_msg_container" id="yui_3_16_0_ym19_1_1507126334566_142791"><br><div id="yiv6496399165"><div id="yui_3_16_0_ym19_1_1507126334566_142790"><div dir="ltr" id="yui_3_16_0_ym19_1_1507126334566_142789"><div class="yiv6496399165gmail_extra" id="yui_3_16_0_ym19_1_1507126334566_142788"><div class="yiv6496399165gmail_quote" id="yui_3_16_0_ym19_1_1507126334566_142787"><div class="yiv6496399165yqt4168115126" id="yiv6496399165yqtfd74850"><blockquote class="yiv6496399165gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;" id="yui_3_16_0_ym19_1_1507126334566_142786"><div id="yui_3_16_0_ym19_1_1507126334566_142785"><div style="color:#000;background-color:#fff;font-family:Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:13px;" id="yui_3_16_0_ym19_1_1507126334566_142784"><div class="yiv6496399165m_2851577998987163918yahoo_quoted" id="yiv6496399165m_2851577998987163918yui_3_16_0_ym19_1_1507126334566_15444" style="display:block;"><div id="yiv6496399165m_2851577998987163918yui_3_16_0_ym19_1_1507126334566_15443" style="font-family:Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:13px;"><div id="yiv6496399165m_2851577998987163918yui_3_16_0_ym19_1_1507126334566_15442" style="font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:16px;"><div class="yiv6496399165m_2851577998987163918y_msg_container" dir="ltr" id="yiv6496399165m_2851577998987163918yui_3_16_0_ym19_1_1507126334566_15535">Overall, I have got the results which are not what I expected (the frequency and spatial response are different with the channel space).</div></div></div></div></div></div></blockquote></div><div><br clear="none"></div><div id="yui_3_16_0_ym19_1_1507126334566_142792">With a loose (or free) orientation inverse, calling `apply_inverse_*` without the default pick_ori=None argument will end up taking the absolute value. This nonlinearity can change the frequency response, which would otherwise be preserved by a linear transformation (which you would have with the pick_ori="normal" and "vector" modes)..</div><div id="yui_3_16_0_ym19_1_1507126334566_142793"><br clear="none"></div><div id="yui_3_16_0_ym19_1_1507126334566_142794">As for the spatial distribution being different, you might want to use `plot_alignment` to verify your sources, conductor model, and sensors are properly aligned.</div><div id="yui_3_16_0_ym19_1_1507126334566_142795"><br clear="none"></div><div id="yui_3_16_0_ym19_1_1507126334566_142796">Eric</div><div class="yiv6496399165yqt4168115126" id="yiv6496399165yqtfd03200"><div id="yui_3_16_0_ym19_1_1507126334566_142797"><br clear="none"></div></div></div></div></div></div></div><br><br></div> </div> </div> </div></div></body></html>