<p><span style="padding: 3px 10px; border-radius: 5px; color: #ffffff; font-weight: bold; display: inline-block; background-color: #ff0000;"> External Email - Use Caution </span></p><p></p><div dir="ltr"><div dir="ltr"><div dir="ltr">There is also the Eelbrain package (<a href="https://eelbrain.readthedocs.io/en/stable/index.html">https://eelbrain.readthedocs.io/en/stable/index.html</a>). </div><div>Eelbrain is an easy to use python package which works with MNE and adds some more statistics and plotting options.</div><div><br></div><div>Cheers, </div><div>Amir </div><div><br></div><div dir="ltr"> </div></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Sat, Jun 29, 2019 at 2:47 PM Alexandre Gramfort <<a href="mailto:alexandre.gramfort@inria.fr">alexandre.gramfort@inria.fr</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><p><span style="padding:3px 10px;border-radius:5px;color:rgb(255,255,255);font-weight:bold;display:inline-block;background-color:rgb(255,0,0)"> External Email - Use Caution </span></p><p></p><div dir="ltr">indeed we should list these on the main website.<div><br></div><div>Let me advertise a few others here:</div><div><br></div><div><a href="https://pactools.github.io/" target="_blank">https://pactools.github.io/</a> (for phase amplitude coupling estimation)<br></div><div><a href="https://autoreject.github.io/" target="_blank">https://autoreject.github.io/</a> (to automate the setting of reject parameter in Epochs and more)<br></div><div><a href="https://pierreablin.github.io/picard/" target="_blank">https://pierreablin.github.io/picard/</a> (for faster ICA estimation)<br></div><div><a href="https://alphacsc.github.io/" target="_blank">https://alphacsc.github.io/</a> (to learn the waveform shapes of MEG/EEG signals using convolutional sparse coding)<br></div><div><br></div><div>Tom Donoghue has also a nice list here : <a href="https://github.com/openlists/OpenTools/blob/master/README.md" target="_blank">https://github.com/openlists/OpenTools/blob/master/README.md</a></div><div><br></div><div>Alex</div><div><br></div><div><br></div><div><br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Fri, Jun 28, 2019 at 5:01 PM Eric Larson <<a href="mailto:larson.eric.d@gmail.com" target="_blank">larson.eric.d@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><p><span style="padding:3px 10px;border-radius:5px;color:rgb(255,255,255);font-weight:bold;display:inline-block;background-color:rgb(255,0,0)"> External Email - Use Caution </span></p><p></p><div dir="ltr">I'd be in favor of adding these to the docs somewhere. It would be useful for people to have such links in one place.<div><br></div><div>Eric</div><div><br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Fri, Jun 28, 2019 at 10:24 AM Marijn van Vliet <<a href="mailto:w.m.vanvliet@gmail.com" target="_blank">w.m.vanvliet@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"> External Email - Use Caution <br>
<br>
Hi MNE users,<br>
<br>
sometimes I want to do some analysis that is not implemented in MNE-Python yet, <br>
leading to a collection of little side packages that do some specific thing. <br>
Maybe they are useful for someone else as well:<br>
<br>
Microstate analysis:<br>
<a href="https://github.com/wmvanvliet/mne_microstates" rel="noreferrer" target="_blank">https://github.com/wmvanvliet/mne_microstates</a><br>
<br>
Representational similarity analysis (RSA):<br>
<a href="https://github.com/wmvanvliet/rsa" rel="noreferrer" target="_blank">https://github.com/wmvanvliet/rsa</a><br>
<br>
<br>
And somewhat larger packages to do bigger things:<br>
<br>
DICS spectral connectivity analysis:<br>
<a href="https://github.com/aaltoimaginglanguage/conpy" rel="noreferrer" target="_blank">https://github.com/aaltoimaginglanguage/conpy</a><br>
<br>
Post-hoc modification framework<br>
<a href="https://github.com/wmvanvliet/posthoc" rel="noreferrer" target="_blank">https://github.com/wmvanvliet/posthoc</a><br>
<br>
<br>
Does anyone else have packages to share?<br>
<br>
best,<br>
Marijn.<br>
<br>
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