<p><span style="padding: 3px 10px; border-radius: 5px; color: #ffffff; font-weight: bold; display: inline-block; background-color: #ff0000;"> External Email - Use Caution </span></p><p></p><div>Hi Afo,<br></div><div><br></div><div>The "environment file" is a single text file that lists the packages and versions needed. If you **download that one text file (environment.yml)** and follow the rest of Alex's instructions, you don't need to manually download the individual packages one by one; the conda command in step 4 will download them for you automatically (as long as you change directory first, to the location where you downloaded environment.yml).<br></div><div><br></div><div class="protonmail_signature_block"><div class="protonmail_signature_block-user"><div>-- dan<br></div><div>Daniel McCloy<br></div><div>https://dan.mccloy.info<br></div><div>Research Scientist<br></div><div>Institute for Learning and Brain Sciences<br></div><div>University of Washington<br></div></div><div class="protonmail_signature_block-proton protonmail_signature_block-empty"><br></div></div><div><br></div><div>‐‐‐‐‐‐‐ Original Message ‐‐‐‐‐‐‐<br></div><div> On Tuesday, May 5, 2020 4:18 AM, afo tarraf <afotarraf@hotmail.com> wrote:<br></div><div> <br></div><blockquote class="protonmail_quote" type="cite"><p><span style="background-color:rgb(255, 0, 0)"><span style="color:rgb(255, 255, 255)"><b> External Email - Use Caution </b></span></span><br></p><p><br></p><div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);"><span style="font-size:13px"><span style="font-size:11pt">Hi Alex,</span></span><br></div><div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);"><span style="font-size:13px"><span style="font-size:11pt"></span></span><br></div><div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);"><span style="font-size:13px"><span style="font-size:11pt">Sorry if I am not clear in the question, I will reply by read color text to your answer</span></span><br></div><div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);"><span style="font-size:13px"><span style="font-size:11pt">and please consider it because I would like to make a perfect installation, because lot of time have been lost due to my first installation, which have always error not related to mne, because the system output
for mne is ok, while the erorr in numpy, matliplot, dll not found,..etc </span></span><br></div><div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);"><span style="font-size:13px"><span style="font-size:11pt"></span></span><br></div><div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);"><span style="font-size:13px"><span style="font-size:11pt"><span style="font-size:13px"><span style="font-size:11pt">doc says for windows:</span></span></span></span><br></div><div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);"><span style="font-size:13px"><span style="font-size:11pt"></span></span><br></div><div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);"><span style="font-size:13px"><span style="font-size:11pt">1 Download the base environment file<br> <<a href="https://raw.githubusercontent.com/mne-tools/mne-python/master/environment.yml" target="_blank" rel="noopener noreferrer">https://raw.githubusercontent.com/mne-tools/mne-python/master/environment.yml</a>><br> -</span></span></div><div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);"><span style="font-size:13px"><span style="color:rgb(200, 38, 19)"><span style="font-size:11pt"></span></span><span style="color:rgb(200, 38, 19)"><span style="font-size:11pt">How? one by one? or there is automatic command to download all?</span></span><span style="font-size:11pt"><br> <br> 2 Open an Anaconda command prompt<br> -<br> </span><span style="color:rgb(200, 38, 19)"><span style="font-size:11pt">OK</span></span><span style="font-size:11pt"><br> 3 cd to the directory where you downloaded the file<br> -<br> </span><span style="color:rgb(200, 38, 19)"><span style="font-size:11pt">which file?, do you mean the files that I downloaded in stedp 1?? for example cd anaconda/path to the files? </span></span><span style="font-size:11pt"><br> 4 Run conda env update --file environment.yml</span></span></div><div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);"><span style="font-size:13px"><span style="font-size:11pt"></span></span><br></div><div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);"><span style="font-size:13px"><span style="color:rgb(200, 38, 19)"><span style="font-size:11pt">what is the important of this step , since in my first installation I did not make it, it works, why it works without this step? then I decided to remove every thing and reinstall </span></span></span><br></div><div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);"><span style="font-size:13px"><span style="color:rgb(200, 38, 19)"><span style="font-size:11pt"></span></span></span><br></div><div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);"><span style="font-size:13px"><span style="color:rgb(0, 36, 81)"><span style="font-size:11pt">Thanks </span></span></span><br></div><div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);"><span style="font-size:13px"><span style="color:rgb(0, 36, 81)"><span style="font-size:11pt">Afo</span></span></span><br></div><div><br></div><div><hr style="display:inline-block;width:98%" tabindex="-1"><br></div><div dir="ltr"><div><span style="font-family:Calibri, sans-serif"><span style="color:#000000"><b>From:</b> mne_analysis-bounces@nmr.mgh.harvard.edu <mne_analysis-bounces@nmr.mgh.harvard.edu> on behalf of mne_analysis-request@nmr.mgh.harvard.edu
<mne_analysis-request@nmr.mgh.harvard.edu><br> <b>Sent:</b> Tuesday, May 5, 2020 12:29 PM<br> <b>To:</b> mne_analysis@nmr.mgh.harvard.edu <mne_analysis@nmr.mgh.harvard.edu><br> <b>Subject:</b> Mne_analysis Digest, Vol 148, Issue 7</span></span> </div><div> <br></div></div><div><span style="font-size:13px"><span style="font-size:11pt"><div><div>Send Mne_analysis mailing list submissions to<br></div><div> mne_analysis@nmr.mgh.harvard.edu<br></div><div> <br></div><div> To subscribe or unsubscribe via the World Wide Web, visit<br></div><div> <a href="https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis"> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis</a><br></div><div> or, via email, send a message with subject or body 'help' to<br></div><div> mne_analysis-request@nmr.mgh.harvard.edu<br></div><div> <br></div><div> You can reach the person managing the list at<br></div><div> mne_analysis-owner@nmr.mgh.harvard.edu<br></div><div> <br></div><div> When replying, please edit your Subject line so it is more specific<br></div><div> than "Re: Contents of Mne_analysis digest..."<br></div><div> <br></div><div> <br></div><div> Today's Topics:<br></div><div> <br></div><div> 1. Re: Mne_analysis Digest, Vol 148, Issue 6 (afo tarraf)<br></div><div> 2. Re: Mne_analysis Digest, Vol 148, Issue 6 (Alexandre Gramfort)<br></div><div> <br></div><div> <br></div><div> ----------------------------------------------------------------------<br></div><div> <br></div><div> Message: 1<br></div><div> Date: Tue, 5 May 2020 09:24:19 +0000<br></div><div> From: afo tarraf <afotarraf@hotmail.com><br></div><div> Subject: Re: [Mne_analysis] Mne_analysis Digest, Vol 148, Issue 6<br></div><div> To: "mne_analysis@nmr.mgh.harvard.edu"<br></div><div> <mne_analysis@nmr.mgh.harvard.edu><br></div><div> Message-ID:<br></div><div> <LNXP265MB1226CA05F95BDA82B17E1032B5A70@LNXP265MB1226.GBRP265.PROD.OUTLOOK.COM><br></div><div> <br></div><div> Content-Type: text/plain; charset="us-ascii"<br></div><div> <br></div><div> External Email - Use Caution <br></div><div> <br></div><div> I read the link, but you list lot of libraries, my question<br></div><div> downloading one by one manually? pip install each one??<br></div><div> or what is the automatic way?? in window I am, and yes I used anaconda as you recommend<br></div><div> ________________________________<br></div><div> From: mne_analysis-bounces@nmr.mgh.harvard.edu <mne_analysis-bounces@nmr.mgh.harvard.edu> on behalf of mne_analysis-request@nmr.mgh.harvard.edu <mne_analysis-request@nmr.mgh.harvard.edu><br></div><div> Sent: Tuesday, May 5, 2020 11:58 AM<br></div><div> To: mne_analysis@nmr.mgh.harvard.edu <mne_analysis@nmr.mgh.harvard.edu><br></div><div> Subject: Mne_analysis Digest, Vol 148, Issue 6<br></div><div> <br></div><div> Send Mne_analysis mailing list submissions to<br></div><div> mne_analysis@nmr.mgh.harvard.edu<br></div><div> <br></div><div> To subscribe or unsubscribe via the World Wide Web, visit<br></div><div> <a href="https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis"> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis</a><br></div><div> or, via email, send a message with subject or body 'help' to<br></div><div> mne_analysis-request@nmr.mgh.harvard.edu<br></div><div> <br></div><div> You can reach the person managing the list at<br></div><div> mne_analysis-owner@nmr.mgh.harvard.edu<br></div><div> <br></div><div> When replying, please edit your Subject line so it is more specific<br></div><div> than "Re: Contents of Mne_analysis digest..."<br></div><div> <br></div><div> <br></div><div> Today's Topics:<br></div><div> <br></div><div> 1. simple installation (afo tarraf)<br></div><div> 2. Re: simple installation (Francesco Mattioli)<br></div><div> 3. Re: simple installation (Alexandre Gramfort)<br></div><div> <br></div><div> <br></div><div> ----------------------------------------------------------------------<br></div><div> <br></div><div> Message: 1<br></div><div> Date: Tue, 5 May 2020 08:41:21 +0000<br></div><div> From: afo tarraf <afotarraf@hotmail.com><br></div><div> Subject: [Mne_analysis] simple installation<br></div><div> To: "mne_analysis@nmr.mgh.harvard.edu"<br></div><div> <mne_analysis@nmr.mgh.harvard.edu><br></div><div> Message-ID:<br></div><div> <LNXP265MB1226DEBCBF3FCD0D77CCEBFCB5A70@LNXP265MB1226.GBRP265.PROD.OUTLOOK.COM><br></div><div> <br></div><div> Content-Type: text/plain; charset="iso-8859-1"<br></div><div> <br></div><div> External Email - Use Caution<br></div><div> <br></div><div> Hi,<br></div><div> <br></div><div> Download the base environment file<<a href="https://raw.githubusercontent.com/mne-tools/mne-python/master/environment.yml">https://raw.githubusercontent.com/mne-tools/mne-python/master/environment.yml</a>><br></div><div> <br></div><div> name: base<br></div><div> channels:<br></div><div> - defaults<br></div><div> dependencies:<br></div><div> - python>=3.5<br></div><div> - pip<br></div><div> - mkl<br></div><div> - numpy<br></div><div> - scipy<br></div><div> - matplotlib<br></div><div> - numba<br></div><div> <br></div><div> .<br></div><div> .<br></div><div> .<br></div><div> each of those I should install one bye one, or there is a command to install it at once in window?<br></div><div> <br></div><div> Best regards<br></div><div> Afo<br></div><div> -------------- next part --------------<br></div><div> An HTML attachment was scrubbed...<br></div><div> URL: <a href="http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20200505/b5155c46/attachment-0001.html"> http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20200505/b5155c46/attachment-0001.html</a><br></div><div> <br></div><div> ------------------------------<br></div><div> <br></div><div> Message: 2<br></div><div> Date: Tue, 5 May 2020 10:49:03 +0200<br></div><div> From: Francesco Mattioli <francesco.mttl@gmail.com><br></div><div> Subject: Re: [Mne_analysis] simple installation<br></div><div> To: Discussion and support forum for the users of MNE Software<br></div><div> <mne_analysis@nmr.mgh.harvard.edu><br></div><div> Message-ID:<br></div><div> <CABMcZVBN2omDBLV4jBoJiYBgBQmyP7zZ92Zo+Piph1aLw-_+AQ@mail.gmail.com><br></div><div> Content-Type: text/plain; charset="utf-8"<br></div><div> <br></div><div> External Email - Use Caution<br></div><div> <br></div><div> are you using anaconda?<br></div><div> <br></div><div> Francesco Mattioli<br></div><div> <br></div><div> I'm trying to work without distractions. If I do not respond immediately,<br></div><div> drink a cup of tea and be patient. Great ideas need deep work!<br></div><div> <br></div><div> ?<br></div><div> <br></div><div> Il giorno mar 5 mag 2020 alle ore 10:42 afo tarraf <afotarraf@hotmail.com><br></div><div> ha scritto:<br></div><div> <br></div><div> > External Email - Use Caution<br></div><div> ><br></div><div> > Hi,<br></div><div> ><br></div><div> > Download the base environment file<br></div><div> > <<a href="https://raw.githubusercontent.com/mne-tools/mne-python/master/environment.yml">https://raw.githubusercontent.com/mne-tools/mne-python/master/environment.yml</a>><br></div><div> ><br></div><div> > name: base<br></div><div> > channels:<br></div><div> > - defaults<br></div><div> > dependencies:<br></div><div> > - python>=3.5<br></div><div> > - pip<br></div><div> > - mkl<br></div><div> > - numpy<br></div><div> > - scipy<br></div><div> > - matplotlib<br></div><div> > - numba<br></div><div> ><br></div><div> > .<br></div><div> > .<br></div><div> > .<br></div><div> > each of those I should install one bye one, or there is a command to<br></div><div> > install it at once in window?<br></div><div> ><br></div><div> > Best regards<br></div><div> > Afo<br></div><div> > _______________________________________________<br></div><div> > Mne_analysis mailing list<br></div><div> > Mne_analysis@nmr.mgh.harvard.edu<br></div><div> > <a href="https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis">https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis</a><br></div><div> -------------- next part --------------<br></div><div> An HTML attachment was scrubbed...<br></div><div> URL: <a href="http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20200505/45d88162/attachment-0001.html"> http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20200505/45d88162/attachment-0001.html</a><br></div><div> <br></div><div> ------------------------------<br></div><div> <br></div><div> Message: 3<br></div><div> Date: Tue, 5 May 2020 10:58:39 +0200<br></div><div> From: Alexandre Gramfort <alexandre.gramfort@inria.fr><br></div><div> Subject: Re: [Mne_analysis] simple installation<br></div><div> To: Discussion and support forum for the users of MNE Software<br></div><div> <mne_analysis@nmr.mgh.harvard.edu><br></div><div> Message-ID:<br></div><div> <CADeotZqwpM--JnHNDhaxkb-HMzd4vtNWgTMUx52+EfYB7T8N_w@mail.gmail.com><br></div><div> Content-Type: text/plain; charset="utf-8"<br></div><div> <br></div><div> External Email - Use Caution<br></div><div> <br></div><div> please have a look at:<br></div><div> <br></div><div> <a href="https://mne.tools/stable/install/mne_python.html#installing-mne-python-and-its-dependencies">https://mne.tools/stable/install/mne_python.html#installing-mne-python-and-its-dependencies</a><br></div><div> <br></div><div> A<br></div><div> -------------- next part --------------<br></div><div> An HTML attachment was scrubbed...<br></div><div> URL: <a href="http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20200505/dc723016/attachment.html"> http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20200505/dc723016/attachment.html</a><br></div><div> <br></div><div> ------------------------------<br></div><div> <br></div><div> _______________________________________________<br></div><div> Mne_analysis mailing list<br></div><div> Mne_analysis@nmr.mgh.harvard.edu<br></div><div> <a href="https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis">https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis</a><br></div><div> <br></div><div> End of Mne_analysis Digest, Vol 148, Issue 6<br></div><div> ********************************************<br></div><div> -------------- next part --------------<br></div><div> An HTML attachment was scrubbed...<br></div><div> URL: <a href="http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20200505/218859be/attachment-0001.html"> http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20200505/218859be/attachment-0001.html</a> <br></div><div> <br></div><div> ------------------------------<br></div><div> <br></div><div> Message: 2<br></div><div> Date: Tue, 5 May 2020 11:28:53 +0200<br></div><div> From: Alexandre Gramfort <alexandre.gramfort@inria.fr><br></div><div> Subject: Re: [Mne_analysis] Mne_analysis Digest, Vol 148, Issue 6<br></div><div> To: Discussion and support forum for the users of MNE Software<br></div><div> <mne_analysis@nmr.mgh.harvard.edu><br></div><div> Message-ID:<br></div><div> <CADeotZpb+kwRV6XdGZOeJkxq3OVviPO9GyTndTVt+SjsOiqP2w@mail.gmail.com><br></div><div> Content-Type: text/plain; charset="utf-8"<br></div><div> <br></div><div> External Email - Use Caution <br></div><div> <br></div><div> doc says for windows:<br></div><div> <br></div><div> <br></div><div> -<br></div><div> <br></div><div> Download the base environment file<br></div><div> <<a href="https://raw.githubusercontent.com/mne-tools/mne-python/master/environment.yml">https://raw.githubusercontent.com/mne-tools/mne-python/master/environment.yml</a>><br></div><div> -<br></div><div> <br></div><div> Open an Anaconda command prompt<br></div><div> -<br></div><div> <br></div><div> cd to the directory where you downloaded the file<br></div><div> -<br></div><div> <br></div><div> Run conda env update --file environment.yml<br></div><div> <br></div><div> <br></div><div> HTH<br></div><div> Alex<br></div><div> -------------- next part --------------<br></div><div> An HTML attachment was scrubbed...<br></div><div> URL: <a href="http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20200505/eb80f96d/attachment.html"> http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20200505/eb80f96d/attachment.html</a> <br></div><div> <br></div><div> ------------------------------<br></div><div> <br></div><div> _______________________________________________<br></div><div> Mne_analysis mailing list<br></div><div> Mne_analysis@nmr.mgh.harvard.edu<br></div><div> <a href="https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis">https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis</a><br></div><div> <br></div><div> End of Mne_analysis Digest, Vol 148, Issue 7<br></div><div> ********************************************<br></div></div></span></span></div></blockquote><div><br></div>