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Thank you so much! Both of them were helpful. <br>
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-Manorama<br>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> mne_analysis-bounces@nmr.mgh.harvard.edu <mne_analysis-bounces@nmr.mgh.harvard.edu> on behalf of Marijn van Vliet <w.m.vanvliet@gmail.com><br>
<b>Sent:</b> Tuesday, June 23, 2020 1:38 AM<br>
<b>To:</b> mne_analysis@nmr.mgh.harvard.edu <mne_analysis@nmr.mgh.harvard.edu><br>
<b>Subject:</b> Re: [Mne_analysis] How to save a Brain object as a file</font>
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<p><span style="padding:3px 10px; border-radius:5px; color:#ffffff; font-weight:bold; display:inline-block; background-color:#ff0000"> External Email - Use Caution </span></p>
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<p>And PySurfer uses Mayavi for the actual plotting. So even easier is to use:</p>
<p>from mayavi import mlab<br>
mlab.savefig('my_brain.png')</p>
<p><a class="x_moz-txt-link-freetext" href="https://docs.enthought.com/mayavi/mayavi/auto/mlab_figure.html#savefig">https://docs.enthought.com/mayavi/mayavi/auto/mlab_figure.html#savefig</a><br>
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<div class="x_moz-cite-prefix">On 23/06/2020 02:21, Dan McCloy wrote:<br>
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<p><span style="padding:3px 10px; border-radius:5px; color:#ffffff; font-weight:bold; display:inline-block; background-color:#ff0000"> External Email - Use Caution </span></p>
<div>The output of stc.plot() is a pysurfer.Brain object, so screenshot() is documented in the PySurfer docs, not the MNE-Python docs:
<a href="https://pysurfer.github.io/generated/surfer.Brain.html#surfer.Brain.screenshot">
https://pysurfer.github.io/generated/surfer.Brain.html#surfer.Brain.screenshot</a><br>
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<div>Note that screenshot() does not save an image file, it "saves" the pixels as a NumPy array of RGB values, and assigns them to a variable. It does not create any files on disk. If you want to save it to disk, passing the variable to
<a rel="nofollow" title="https://matplotlib.org/3.1.0/api/_as_gen/matplotlib.pyplot.imsave.html" target="_blank" href="https://matplotlib.org/3.1.0/api/_as_gen/matplotlib.pyplot.imsave.html">
matplotlib's plt.imsave()</a> is probably easiest.<br>
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<div>-- dan<br>
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<div>Daniel McCloy<br>
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<div><a class="x_moz-txt-link-freetext" href="https://dan.mccloy.info">https://dan.mccloy.info</a><br>
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<div>Research Scientist<br>
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<div>Institute for Learning and Brain Sciences<br>
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<div>University of Washington<br>
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<div>$B!>!>!>!>!>!>!>(B Original Message $B!>!>!>!>!>!>!>(B<br>
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<div>On Monday, June 22, 2020 3:57 PM, Kadwani, Manorama <a class="x_moz-txt-link-rfc2396E" href="mailto:MKADWANI@mgh.harvard.edu">
<MKADWANI@mgh.harvard.edu></a> wrote:<br>
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Hi,<br>
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I plotted source activation using the stc.plot() function as described here in: <a href="https://mne.tools/stable/auto_examples/visualization/plot_publication_figure.html">
https://mne.tools/stable/auto_examples/visualization/plot_publication_figure.html</a>
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I want to save the plots in a certain directory as a file, with a certain name. The website used the 'screenshot()' function for the Brain object.<br>
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But I couldn't find any documentation on the screenshot() function describing its attributes. How do I specify the directory, or the figure size, or resolution?<br>
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Thanks,<br>
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Manorama Kadwani<br>
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