<p><span style="padding: 3px 10px; border-radius: 5px; color: #ffffff; font-weight: bold; display: inline-block; background-color: #ff0000;"> External Email - Use Caution </span></p><p></p><div dir="ltr">HI all,<br>I'm wondering if this is an error because I already have things installed. The dipy page says to uninstall dipy before installing using pip.<div>Are there separate instructions for upgrades? I realized I'm trying to follow install instructions. <br><div><br></div><div>>>> import dipy<br>>>> dipy.__file__<br>'/export/research/analysis/human/jstephen/shared/programs/python/anaconda3/lib/python3.5/site-packages/dipy/__init__.py'</div><div><br></div><div>I also tried to do the upgrade after removing the dipy line from the .yml file, but I got errors relating to PyQt</div><div>Collecting PyQt5>=5.10<br> Using cached PyQt5-5.15.0.tar.gz (3.3 MB)<br> Installing build dependencies: started<br> Installing build dependencies: finished with status 'done'<br> Getting requirements to build wheel: started<br> Getting requirements to build wheel: finished with status 'done'<br> Preparing wheel metadata: started<br> Preparing wheel metadata: finished with status 'error'<br></div><div><br></div><div>I may have more details on the error tomorrow. I lost my connection to the remote server I'm working on.</div><div><br></div><div>Thanks,</div><div>Megan<br clear="all"><div><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div>MEG Technician<br>The Mind Research Network<br>1101 Yale Blvd. NE<br>Albuquerque, New Mexico 87106<br><br></div></div></div></div><br></div></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Wed, Sep 2, 2020 at 4:58 PM Megan Schendel <<a href="mailto:mschendel@mrn.org">mschendel@mrn.org</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div dir="ltr">Hi all,</div><div dir="ltr">I am attempting to follow upgrade instructions. I was able to upgrade conda, and I succeeded in using curl to get the yml file. </div><div>However, when I try the conda env update, I eventually get an error when the update gets to dipy. See below. Any suggestions?</div><div><br></div><div>Thanks for your help,<br>Megan</div><div><br></div><div>conda env update --file environment.yml<br></div><div dir="ltr">Using Anaconda Cloud api site <a href="https://api.anaconda.org" target="_blank">https://api.anaconda.org</a><br>Fetching package metadata ...........<br>Solving package specifications: .</div><div dir="ltr">...<br>ERROR: Invalid requirement: 'dipy --only-binary dipy'<br></div><div dir="ltr"><br></div><div dir="ltr">conda --version && python --version<br>conda 4.3.30<br>Python 3.8.5<br></div><div dir="ltr"><br></div><div>Here is the contents of my environment.yml file:</div><div><br></div><div>name: mne<br>channels:<br>- defaults<br>dependencies:<br>- python>=3.8<br>- pip<br>- numpy<br>- scipy<br>- matplotlib<br>- numba<br>- pandas<br>- xlrd<br>- scikit-learn<br>- h5py<br>- pillow<br>- statsmodels<br>- jupyter<br>- joblib<br>- psutil<br>- numexpr<br>- traits<br>- pyface<br>- traitsui<br>- imageio<br>- tqdm<br>- spyder-kernels<br></div><div dir="ltr">- pip:<br> - mne<br> - imageio-ffmpeg>=0.4.1<br> - vtk>=9.0.1<br> - pyvista>=0.24<br> - pyvistaqt<br> - mayavi<br> - PySurfer[save_movie]<br><font color="#000000" style="background-color:rgb(255,255,0)"> - dipy --only-binary dipy<br></font> - nibabel<br> - nilearn<br> - neo<br> - python-picard<br> - PyQt5>=5.10,<5.14; platform_system == "Darwin"<br> - PyQt5>=5.10; platform_system != "Darwin"<br></div><div dir="ltr"><br clear="all"><div><div dir="ltr"><div dir="ltr"><div>MEG Technician<br>The Mind Research Network<br>1101 Yale Blvd. NE<br>Albuquerque, New Mexico 87106<br><br></div></div></div></div></div></div>
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