[Homer-users] a basic question about installment

Hongyu Yang yanghy720 at gmail.com
Tue Feb 8 17:16:29 EST 2011
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2011/2/8 George Zouridakis <zouridakis at uh.edu>

> Dear All,
>
> can you PLEASE keep your private conversations ...private?
>
> I do not think that the entire user list should receive these emails.
>
> Thank you very much,
> GZ
>
>
>
>    On Feb 8, 2011, at 3:45 PM, Hongyu Yang wrote:
>
>  Daniel,
>
> Let me try. Another question, do I need to set some special directory for
> MCR installment? Or I can use default directory in program file in C drive?
>
> Hongyu
>
> 2011/2/8 Daniel Smith <djsm at umich.edu>
>
>> Hongyu,
>>
>> I believe the .exe for MCR listed on the PMI Homer website is 102Mb. It
>> looks like you downloaded the combined file. I would suggest downloading
>> Homer.exe and MCRInstaller.exe separately and installing MCR first. That
>> always worked for me without having MATLAB installed.
>>
>> -Daniel Smith
>>
>>
>> On Tue, Feb 8, 2011 at 4:09 PM, Hongyu Yang <yanghy720 at gmail.com> wrote:
>>
>>> Hello Daniel,
>>>
>>> I got the one with the MCR (HOMER_EXE_Setup,about 91MB). and I do not
>>> have Matlab in the computer, only MCR here.
>>>
>>> Hongyu
>>>
>>> 2011/2/8 Daniel Kessler <kesslerd at umich.edu>
>>>
>>> As a quick clarifying question: Which version of Homer did you download?
>>>> Did you get the one that includes the MCR, or one of the more recent builds
>>>> (without the MCR)?
>>>>
>>>>
>>>> On Tue, Feb 8, 2011 at 1:40 PM, Daniel Kessler <kesslerd at umich.edu>wrote:
>>>>
>>>>> Hi Hongyu,
>>>>>      It sounds like maybe you don't have the signal processing toolbox
>>>>> for MATLAB, which is a requirement for Homer.m
>>>>>
>>>>> Perhaps things are getting confusing because you have MCR on the
>>>>> computer where you already have MATLAB. Do you have another computer
>>>>> available that does NOT have MATLAB where you could try installing the MCR
>>>>> first, and then running Homer.exe? If so, that may be a good troubleshooting
>>>>> step that can help us figure out how to get Homer installed on the computer
>>>>> where you DO have MATLAB.
>>>>>
>>>>> Daniel
>>>>>
>>>>>
>>>>> On Tue, Feb 8, 2011 at 1:23 PM, Hongyu Yang <yanghy720 at gmail.com>wrote:
>>>>>
>>>>>> Hello Daniel, I tried HomER.m in matlab, but got error reports in the
>>>>>> command window. I think maybe different versions of matlab induced this
>>>>>> problem, so I dicided to use MCR in my computer. Actually I installed it,
>>>>>> and when I open the icon of HOMer, it said:
>>>>>>
>>>>>> Warning: C:\....Homer\v71\toolbox\local\pathdef.m not found. Toolbox
>>>>>> path cache is not being used. Type help toolbox_path_cache for more info.
>>>>>> However, I can not type any words in the command window. What should I do?
>>>>>>
>>>>>> Thanks,
>>>>>> Hongyu
>>>>>>
>>>>>> 2011/2/7 Daniel Kessler <kesslerd at umich.edu>
>>>>>>
>>>>>> Hello Hongyu,
>>>>>>>     I might be able to offer some guidance. The instructions you're
>>>>>>> reading are for using Homer *without *MATLAB (as a sort of stand
>>>>>>> alone).
>>>>>>>
>>>>>>> MCR is the MATLAB component runtime (more info here:
>>>>>>> http://www.mathworks.com/help/toolbox/compiler/f12-999353.html#bsfj64t-1
>>>>>>> )
>>>>>>>
>>>>>>> This enables you to run precompiled MATLAB programs on computers that
>>>>>>> don't have MATLAB.
>>>>>>>
>>>>>>> It sounds like you already have MATLAB on the computer you're using,
>>>>>>> so you can skip most of this. The Homer download page has options for
>>>>>>> HomER.exe and HomER.m. If you're comfortable with MATLAB, you'll actually
>>>>>>> want to get the HomER.m download. Once you have that, unzip the file, and
>>>>>>> add the unzipped directory (and all of its subfolders/files) to your active
>>>>>>> path in MATLAB, then run Homer.m and this should get you what you need.
>>>>>>>
>>>>>>> If you *do *want to run Homer as a stand alone executable with the
>>>>>>> MCR rather than via MATLAB, let me know and I can try to walk you through
>>>>>>> setting that up.
>>>>>>>
>>>>>>> Best of luck,
>>>>>>> Daniel
>>>>>>>
>>>>>>>   On Mon, Feb 7, 2011 at 5:53 PM, Hongyu Yang <yanghy720 at gmail.com>wrote:
>>>>>>>
>>>>>>>>   Hello Homer list,
>>>>>>>>
>>>>>>>> I am a beginner of Homer, have a basic question about MCRinstaller.
>>>>>>>> From the documation folder I found these words:
>>>>>>>>
>>>>>>>> To install the MCR, extract all the files from the ZIP archive into
>>>>>>>> a new
>>>>>>>> directory. (You've probably at least opened the ZIP file, or you
>>>>>>>> wouldn't
>>>>>>>> be reading these directions.) Let's call this directory the
>>>>>>>> MCR_ROOT. In
>>>>>>>> the directions below, I will refer to <MCR_ROOT>. As you are
>>>>>>>> following  the
>>>>>>>> directions, replace this string with the actual path to the
>>>>>>>> directory you
>>>>>>>> extracted the ZIP archive into.
>>>>>>>> Windows:
>>>>>>>> * Put <MCR_ROOT>/bin/win32 and  <MCR_ROOT>/sys/os/win32 (in that
>>>>>>>> order) on
>>>>>>>> your PATH environment variable.
>>>>>>>>
>>>>>>>> I do not know MCR, so I can not understand this. In Matlab I can add
>>>>>>>> path, however I really do
>>>>>>>> not know how to add this path into environment variable in MCR
>>>>>>>> folder. Can you tell me with plain words how I can do this?
>>>>>>>>
>>>>>>>> Thanks,
>>>>>>>> Hongyu
>>>>>>>>
>>>>>>>> _______________________________________________
>>>>>>>> Homer-users mailing list
>>>>>>>> Homer-users at nmr.mgh.harvard.edu
>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/homer-users
>>>>>>>>
>>>>>>>>
>>>>>>>> The information in this e-mail is intended only for the person to
>>>>>>>> whom it is
>>>>>>>> addressed. If you believe this e-mail was sent to you in error and
>>>>>>>> the e-mail
>>>>>>>> contains patient information, please contact the Partners Compliance
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>>>>>>>> but does not contain patient information, please contact the sender
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>>>>>>>> dispose of the e-mail.
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Daniel A. Kessler
>>>>>>> Research Manager
>>>>>>> Center for Human Growth and Development
>>>>>>> University of Michigan, Ann Arbor
>>>>>>> kesslerd at umich.edu
>>>>>>> +1 734.418.8134
>>>>>>> www.google.com/profiles/dankessler
>>>>>>>
>>>>>>> Schedule a Meeting with me: tgl.me/dankessler
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> Homer-users mailing list
>>>>>>> Homer-users at nmr.mgh.harvard.edu
>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/homer-users
>>>>>>>
>>>>>>>
>>>>>>> The information in this e-mail is intended only for the person to
>>>>>>> whom it is
>>>>>>> addressed. If you believe this e-mail was sent to you in error and
>>>>>>> the e-mail
>>>>>>> contains patient information, please contact the Partners Compliance
>>>>>>> HelpLine at
>>>>>>> http://www.partners.org/complianceline . If the e-mail was sent to
>>>>>>> you in error
>>>>>>> but does not contain patient information, please contact the sender
>>>>>>> and properly
>>>>>>> dispose of the e-mail.
>>>>>>>
>>>>>>>
>>>>>>
>>>>>> _______________________________________________
>>>>>> Homer-users mailing list
>>>>>> Homer-users at nmr.mgh.harvard.edu
>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/homer-users
>>>>>>
>>>>>>
>>>>>> The information in this e-mail is intended only for the person to whom
>>>>>> it is
>>>>>> addressed. If you believe this e-mail was sent to you in error and the
>>>>>> e-mail
>>>>>> contains patient information, please contact the Partners Compliance
>>>>>> HelpLine at
>>>>>> http://www.partners.org/complianceline . If the e-mail was sent to
>>>>>> you in error
>>>>>> but does not contain patient information, please contact the sender
>>>>>> and properly
>>>>>> dispose of the e-mail.
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Daniel A. Kessler
>>>>> Research Manager
>>>>> Center for Human Growth and Development
>>>>> University of Michigan, Ann Arbor
>>>>> kesslerd at umich.edu
>>>>> +1 734.418.8134
>>>>> www.google.com/profiles/dankessler
>>>>>
>>>>> Schedule a Meeting with me: tgl.me/dankessler
>>>>>
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> Daniel A. Kessler
>>>> Research Manager
>>>> Center for Human Growth and Development
>>>> University of Michigan, Ann Arbor
>>>> kesslerd at umich.edu
>>>> +1 734.418.8134
>>>> www.google.com/profiles/dankessler
>>>>
>>>> Schedule a Meeting with me: tgl.me/dankessler
>>>>
>>>>
>>>>
>>>>
>>>> _______________________________________________
>>>> Homer-users mailing list
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>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/homer-users
>>>>
>>>>
>>>> The information in this e-mail is intended only for the person to whom
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>>>> dispose of the e-mail.
>>>>
>>>>
>>>
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>>
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>>
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>
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>
> U
>   H
>
> UNIVERSITY *of * HOUSTON
>
>
> Engineering Technology, Computer Science,
> Electrical and Computer Engineering
>
> *George Zouridakis, Ph.D. *
> *Professor and Director
> Biomedical Imaging Lab*
>
> 218 Philip G. Hoffman Hall   •   Houston, TX 77204-3058   •   Room 228
> 713-743-8656 • Fax: 713-743-1250
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> is
> addressed. If you believe this e-mail was sent to you in error and the
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