[Homer-users] a basic question about installment

Nadege Roche nadege at nmr.mgh.harvard.edu
Tue Feb 8 17:42:42 EST 2011
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I agree with George, this back and forth is not meant for the whole list anymore.
Daniel and Hongyu, can you follow up privately ?
Thanks,
Nadege

On Feb 8, 2011, at 5:16 PM, Hongyu Yang <yanghy720 at gmail.com> wrote:

> Hello,
>  
> I think you subscribed the list and did not remove it. You need to log on the website to do that or send an email to cancel you subscription.
> 
> 2011/2/8 George Zouridakis <zouridakis at uh.edu>
> Dear All,
> 
> can you PLEASE keep your private conversations ...private?
> 
> I do not think that the entire user list should receive these emails.
> 
> Thank you very much,
> GZ
> 
> 
> 
> On Feb 8, 2011, at 3:45 PM, Hongyu Yang wrote:
> 
>> Daniel,
>>  
>> Let me try. Another question, do I need to set some special directory for MCR installment? Or I can use default directory in program file in C drive?
>>  
>> Hongyu
>> 
>> 2011/2/8 Daniel Smith <djsm at umich.edu>
>> Hongyu,
>> 
>> I believe the .exe for MCR listed on the PMI Homer website is 102Mb. It looks like you downloaded the combined file. I would suggest downloading Homer.exe and MCRInstaller.exe separately and installing MCR first. That always worked for me without having MATLAB installed.
>> 
>> -Daniel Smith
>> 
>> 
>> On Tue, Feb 8, 2011 at 4:09 PM, Hongyu Yang <yanghy720 at gmail.com> wrote:
>> Hello Daniel,
>>  
>> I got the one with the MCR (HOMER_EXE_Setup,about 91MB). and I do not have Matlab in the computer, only MCR here.
>>  
>> Hongyu
>> 
>> 2011/2/8 Daniel Kessler <kesslerd at umich.edu>
>> 
>> As a quick clarifying question: Which version of Homer did you download? Did you get the one that includes the MCR, or one of the more recent builds (without the MCR)?
>> 
>> 
>> On Tue, Feb 8, 2011 at 1:40 PM, Daniel Kessler <kesslerd at umich.edu> wrote:
>> Hi Hongyu,
>>      It sounds like maybe you don't have the signal processing toolbox for MATLAB, which is a requirement for Homer.m
>> 
>> Perhaps things are getting confusing because you have MCR on the computer where you already have MATLAB. Do you have another computer available that does NOT have MATLAB where you could try installing the MCR first, and then running Homer.exe? If so, that may be a good troubleshooting step that can help us figure out how to get Homer installed on the computer where you DO have MATLAB.
>> 
>> Daniel
>> 
>> 
>> On Tue, Feb 8, 2011 at 1:23 PM, Hongyu Yang <yanghy720 at gmail.com> wrote:
>> Hello Daniel, I tried HomER.m in matlab, but got error reports in the command window. I think maybe different versions of matlab induced this problem, so I dicided to use MCR in my computer. Actually I installed it, and when I open the icon of HOMer, it said:
>>  
>> Warning: C:\....Homer\v71\toolbox\local\pathdef.m not found. Toolbox path cache is not being used. Type help toolbox_path_cache for more info. However, I can not type any words in the command window. What should I do?
>>  
>> Thanks,
>> Hongyu
>> 
>> 2011/2/7 Daniel Kessler <kesslerd at umich.edu> 
>> 
>> Hello Hongyu,
>>     I might be able to offer some guidance. The instructions you're reading are for using Homer without MATLAB (as a sort of stand alone).
>> 
>> MCR is the MATLAB component runtime (more info here: http://www.mathworks.com/help/toolbox/compiler/f12-999353.html#bsfj64t-1)
>> 
>> This enables you to run precompiled MATLAB programs on computers that don't have MATLAB. 
>> 
>> It sounds like you already have MATLAB on the computer you're using, so you can skip most of this. The Homer download page has options for HomER.exe and HomER.m. If you're comfortable with MATLAB, you'll actually want to get the HomER.m download. Once you have that, unzip the file, and add the unzipped directory (and all of its subfolders/files) to your active path in MATLAB, then run Homer.m and this should get you what you need.
>> 
>> If you do want to run Homer as a stand alone executable with the MCR rather than via MATLAB, let me know and I can try to walk you through setting that up.
>> 
>> Best of luck,
>> Daniel
>> 
>> On Mon, Feb 7, 2011 at 5:53 PM, Hongyu Yang <yanghy720 at gmail.com> wrote:
>> Hello Homer list,
>>  
>> I am a beginner of Homer, have a basic question about MCRinstaller. From the documation folder I found these words:
>>  
>> To install the MCR, extract all the files from the ZIP archive into a new
>> directory. (You've probably at least opened the ZIP file, or you wouldn't
>> be reading these directions.) Let's call this directory the MCR_ROOT. In
>> the directions below, I will refer to <MCR_ROOT>. As you are following  the
>> directions, replace this string with the actual path to the directory you
>> extracted the ZIP archive into.
>> Windows:
>> * Put <MCR_ROOT>/bin/win32 and  <MCR_ROOT>/sys/os/win32 (in that order) on
>> your PATH environment variable.
>>  
>> I do not know MCR, so I can not understand this. In Matlab I can add path, however I really do
>> not know how to add this path into environment variable in MCR folder. Can you tell me with plain words how I can do this?
>>  
>> Thanks,
>> Hongyu
>> 
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>> 
>> -- 
>> Daniel A. Kessler
>> Research Manager
>> Center for Human Growth and Development
>> University of Michigan, Ann Arbor
>> kesslerd at umich.edu
>> +1 734.418.8134
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>> 
>> -- 
>> Daniel A. Kessler
>> Research Manager
>> Center for Human Growth and Development
>> University of Michigan, Ann Arbor
>> kesslerd at umich.edu
>> +1 734.418.8134
>> www.google.com/profiles/dankessler
>> 
>> Schedule a Meeting with me: tgl.me/dankessler
>> 
>> 
>> 
>> 
>> 
>> 
>> -- 
>> Daniel A. Kessler
>> Research Manager
>> Center for Human Growth and Development
>> University of Michigan, Ann Arbor
>> kesslerd at umich.edu
>> +1 734.418.8134
>> www.google.com/profiles/dankessler
>> 
>> Schedule a Meeting with me: tgl.me/dankessler
>> 
>> 
>> 
>> 
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>> The information in this e-mail is intended only for the person to whom it is
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>> contains patient information, please contact the Partners Compliance HelpLine at
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> 
> 
>  
> U
>   H
> UNIVERSITY of  HOUSTON
> 
>  	
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> 
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