[Homer-users] Problems in opening Simple_Probe.nirs

[austin1]

If you go to the link Jay provided, click on "Documentation" on the right, you will also find a set of sample files, including a new version of simple probe that includes all the variables.  The one you have appears to be what was included as a sample file with the original homer (and I'm going from memory on that -- i have the same file you're speaking of - SD only -- and i believe it came from the original homer)

-----Original Message-----
>From: jdubb at nmr.mgh.harvard.edu
>Sent: Mar 4, 2013 6:13 PM
>To: homer-users at nmr.mgh.harvard.edu
>Subject: Re: [Homer-users] Problems in opening Simple_Probe.nirs
>
>
>If it only has SD then it's not a .nirs file.
>HOMER2 only knows and loads files in the .nirs
>
>
>Which means it has to have at least the following
>variables
>
> t
> d
> SD
> s
> aux
>
>See documentation on the HOMER2 website goes into
>more detail about the .nirs format.
>
>http://www.nmr.mgh.harvard.edu/PMI/resources/homer2/home.htm
>
>
>Jay
>
>
>> Thanks Meryem for your reply. I did as you advised and I can only see on variable: SD
>>
>>
>> On 04 Mar 2013, at 20:42, "Meryem Ayse Yucel" <mayucel at nmr.mgh.harvard.edu> wrote:
>>
>>> Can you try loading your .nirs file in Matlab directly and see if you
>>> actually have d, s etc?
>>>
>>> load Simple_Probe.nirs -mat
>>>
>>>
>>>
>>> Meryem
>>>
>>>> Dear List,
>>>>
>>>> I am trying to upload the sample data file (Simple_Probe.nirs) in Homer2
>>>> but keep getting the following error message:
>>>>
>>>> Warning: Variable 'd' not found.
>>>>> In checkNIRSFormat at 15
>>>>  In getNIRSFileErrors at 8
>>>>  In GetNIRSDataSet at 32
>>>>  In EasyNIRS>EasyNIRS_OpeningFcn at 67
>>>>  In gui_mainfcn at 221
>>>>  In EasyNIRS at 43
>>>>  In Homer2_UI at 3
>>>> Warning: Variable 't' not found.
>>>>> In checkNIRSFormat at 15
>>>>  In getNIRSFileErrors at 8
>>>>  In GetNIRSDataSet at 32
>>>>  In EasyNIRS>EasyNIRS_OpeningFcn at 67
>>>>  In gui_mainfcn at 221
>>>>  In EasyNIRS at 43
>>>>  In Homer2_UI at 3
>>>> Warning: Variable 's' not found.
>>>>> In checkNIRSFormat at 15
>>>>  In getNIRSFileErrors at 8
>>>>  In GetNIRSDataSet at 32
>>>>  In EasyNIRS>EasyNIRS_OpeningFcn at 67
>>>>  In gui_mainfcn at 221
>>>>  In EasyNIRS at 43
>>>>  In Homer2_UI at 3
>>>> Warning: Variable 'aux' not found.
>>>>> In checkNIRSFormat at 15
>>>>  In getNIRSFileErrors at 8
>>>>  In GetNIRSDataSet at 32
>>>>  In EasyNIRS>EasyNIRS_OpeningFcn at 67
>>>>  In gui_mainfcn at 221
>>>>  In EasyNIRS at 43
>>>>  In Homer2_UI at 3
>>>> Warning: Variable 'procInput' not found.
>>>>> In checkNIRSFormat at 15
>>>>  In getNIRSFileErrors at 8
>>>>  In GetNIRSDataSet at 32
>>>>  In EasyNIRS>EasyNIRS_OpeningFcn at 67
>>>>  In gui_mainfcn at 221
>>>>  In EasyNIRS at 43
>>>>  In Homer2_UI at 3
>>>> ??? Reference to non-existent field 'errCoun'.
>>>>
>>>> Error in ==> getNIRSFileErrors at 16
>>>>        flags(iF).errCount = flags(iF).errCoun+1;
>>>>
>>>> Error in ==> GetNIRSDataSet at 32
>>>> [files filesErr] = getNIRSFileErrors(files);
>>>>
>>>> Error in ==> EasyNIRS>EasyNIRS_OpeningFcn at 67
>>>> [files pathnm] = GetNIRSDataSet(handles);
>>>>
>>>> Error in ==> gui_mainfcn at 221
>>>>    feval(gui_State.gui_OpeningFcn, gui_hFigure, [], guidata(gui_hFigure),
>>>> varargin{:});
>>>>
>>>> Error in ==> EasyNIRS at 43
>>>>    gui_mainfcn(gui_State, varargin{:});
>>>>
>>>> Error in ==> Homer2_UI at 3
>>>> EasyNIRS();
>>>>
>>>> I am using Matlab R2011a Student Version running on a Macbook Pro Intel
>>>> Core 2 Duo (OS X Version 10.8.2)
>>>>
>>>> Would anyone be able to pinpoint the mistake/s I am doing when trying to
>>>> upload this file?
>>>>
>>>> Thanks and regards,
>>>> Marco
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>>>>
>>>>
>>>>
>>>
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>>
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