[Homer-users] Using HOMer with NIRx DYNOT system
David Boas
dboas at nmr.mgh.harvard.edu
Mon Mar 11 15:56:52 EDT 2013
Dear Rishabh,
Thank you for posting these scripts. I'd like to encourage you to
deposit these scripts in the
Neuroimaging Informatics Tools and Resources Clearinghouse at
www.nitrc.org following the example of Rebecca Dewey who did this for
her scripts to convert Hitachi files into .nirs files.
Her code can be found at
http://www.nitrc.org/projects/hitachi2nirs/
The process is simple. From the home page, you just click
'register a new tool' under the 'Tools & Resource' tab. Make sure you
tag it as a optical tool and friendly with homer2.
In general, I think this will become a very useful repository for fNIRS
related processing algorithms that people write and want to contribute
to the community.
Regards,
David Boas
On 3/11/13 2:04 PM, Rishabh Gupta wrote:
> Hi Everybody,
>
> I am attaching the two files I developed. But I want to warn you that
> these files were highly specific to my application but I have
> commented it well enough so that you all can understand what I have
> done. You might have to tweak in some (most) of the values in the
> program so please make sure that you read the comment provided above
> the variable. I am sorry I could not make my program more automated
> because well I was just trying out Homer for the first time myself
> yesterday.
>
> If you have any doubts please feel free to contact me.
>
> Regards
>
> Rishabh Gupta,
> MuSAE Lab,
> INRS-EMT, Montreal,
> Canada
>
> On Mon, Mar 11, 2013 at 2:24 PM, Bruno Preilowski
> <preilowski at uni-tuebingen.de <mailto:preilowski at uni-tuebingen.de>> wrote:
>
> Hi Rishabh,
>
> I would be very interested in the script, too. We are using
> NIRSport which is the mobile 8 x 8 version of a NIRScout System.
>
> Best regards,
> Bruno
> ------------------------------------------------------------------------
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>
>
> Von: Rishabh Gupta <grishabhg at gmail.com <mailto:grishabhg at gmail.com>>
> Antworten an: <homer-users at nmr.mgh.harvard.edu
> <mailto:homer-users at nmr.mgh.harvard.edu>>
> Datum: Montag, 11. März 2013 18:14
> An: <homer-users at nmr.mgh.harvard.edu
> <mailto:homer-users at nmr.mgh.harvard.edu>>
> Betreff: Re: [Homer-users] Using HOMer with NIRx DYNOT system
>
> Hi Korien,
>
> I use the NIRx NIRScout system. So I have written a script to
> convert my '.wl1' (760nm), '.wl2' (850nm) files to .nirs
> format following the instructions in the HOMER manual (first
> few pages). If you want I can send you the script and you can
> have look at it may be?
>
> Regards
>
> Rishabh Gupta
> INRS-EMT, Montreal,
> Canada.
>
> On Mon, Mar 11, 2013 at 12:21 PM, Korien Leemhuis
> <k.leemhuis at student.rug.nl <mailto:k.leemhuis at student.rug.nl>>
> wrote:
>
> Hello,
>
> Is there anyone using data from the NIRx DYNOT system? If
> yes, can you tell me how I should convert the output data
> of this system to be able to analyze it with HOMer?
> I tried several things, but I have no clue..
>
> Thanks in advance!
>
> Korien Leemhuis
>
> /NeuroImaging Center Groningen, The Netherlands/
>
>
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