[Homer-users] issues with matlab 2014

Tue May 19 09:55:25 EDT 2015

Point I. Jay hasn’t been able to recreate this issue.

Point II below has now been fixed in the SVN version from NITRC.

Point III. Just uncheck the "show run HRF" and you are then able to display the unaveraged time courses again with the ‘Raw’ “OD’ and “Conc” radio buttons again.

> On May 18, 2015, at 7:48 AM, Boomen, C. van den (Carlijn) <C.vandenBoomen at uu.nl> wrote:
> 
> Dear David,
> 
> Thank you for fixing this issue. 
> I've gone through the Homer2 Users's Guide (version Nov 29, 2012) using Matlab 2014b and came across the following remaining issues:
> 
> I) page 13, 2nd line on top of page: when dragging the mouse cursor over the stimulus marks, matlab crashes and quits. 
> 
> II) when clicking 'show Run HRF' the following error message appears:
> Error using matlab.ui.control.UIControl/set
> While setting the 'Value' property of UIControl:
> Conversion to double from matlab.ui.eventdata.ActionData is not possible.
> 
> Error in EasyNIRS>checkboxPlotHRFRun_Callback (line 545)
>     set(hObject,'value',eventdata(1))
> 
> Error in gui_mainfcn (line 95)
>         feval(varargin{:});
> 
> Error in EasyNIRS (line 43)
>     gui_mainfcn(gui_State, varargin{:});
> 
> Error in
> @(hObject,eventdata)EasyNIRS('checkboxPlotHRFRun_Callback',hObject,eventdata,guidata(hObject))
> 
>  
> Error while evaluating UIControl Callback
> 
> III) When clicking any of the 'Raw Data' 'OD' or 'Conc' options after clicking 'show Run HRF' the program switches to the option 'Conc' and the other options are disabled and cannot retrieved unless resetting the file and re-running the processing stream.
> 
> It would be great if these could be fixed as well.
> 
> Best,
> Carlijn
> 
> Dr. Carlijn van den Boomen | Departments of Developmental and Experimental Psychology | Utrecht University | Langeveld Building - room H039 | Heidelberglaan 1 | 3584 CS Utrecht | the Netherlands | phone: +31(30) 253 3386 | fax: +31(30) 253 4511
> From: homer-users-bounces at nmr.mgh.harvard.edu [homer-users-bounces at nmr.mgh.harvard.edu] on behalf of David Boas [dboas at nmr.mgh.harvard.edu]
> Sent: Friday, May 15, 2015 11:32 PM
> To: homer-users at nmr.mgh.harvard.edu
> Subject: Re: [Homer-users] issues with matlab 2014
> 
> Jay has fixed this specific issue and committed it back to to the repository at nitric.org <http://nitric.org/>
> https://www.nitrc.org/projects/homer2/ <https://www.nitrc.org/projects/homer2/>
> Note that right now you can only get the fix through svn. We infrequently update the package distributions.
> 
> Jay has found a number of other issues with matlab 2014b that he is working through now. For instance, you can’t fix errors in firs files and thus the sample data we provide can’t be used. He is working on fixing that.
> 
> Let us know if you have other 2014b issues.
> 
> David
> 
> 
> 
> 
>> On May 15, 2015, at 9:07 AM, David Boas <dboas at nmr.mgh.harvard.edu <mailto:dboas at nmr.mgh.harvard.edu>> wrote:
>> 
>> Dear All,
>> Numerous people have mentioned the issues with Homer and matlab 2014. We are aware of the issue and hope to implement a fix soon.
>> 
>> Ted mentioned to me that the fix is something like "changing the line “if ~displayAxes” to  “if(isempty(displayAxes))” “. We will look into this soon and let you know when there is a fix. In the mean time, if anyone does fix this, please let us know and we will make the change public.
>> 
>> Thanks,
>> David
>> 
>> 
>> 
>>> On May 15, 2015, at 4:59 AM, Boomen, C. van den (Carlijn) <C.vandenBoomen at uu.nl <mailto:C.vandenBoomen at uu.nl>> wrote:
>>> 
>>> Dear Rob,
>>> 
>>> Thank you, that might indeed explain the problem. 
>>> 
>>> Best,
>>> Carlijn
>>> 
>>> Dr. Carlijn van den Boomen | Departments of Developmental and Experimental Psychology | Utrecht University | Langeveld Building - room H039 | Heidelberglaan 1 | 3584 CS Utrecht | the Netherlands | phone: +31(30) 253 3386 | fax: +31(30) 253 4511
>>> 
>>> ________________________________________
>>> From: homer-users-bounces at nmr.mgh.harvard.edu <mailto:homer-users-bounces at nmr.mgh.harvard.edu> [homer-users-bounces at nmr.mgh.harvard.edu <mailto:homer-users-bounces at nmr.mgh.harvard.edu>] on behalf of Labruyere Rob [Rob.Labruyere at kispi.uzh.ch <mailto:Rob.Labruyere at kispi.uzh.ch>]
>>> Sent: Thursday, May 14, 2015 10:12 PM
>>> To: homer-users at nmr.mgh.harvard.edu <mailto:homer-users at nmr.mgh.harvard.edu>
>>> Subject: Re: [Homer-users] (no subject)
>>> 
>>> Dear Carlijn
>>> 
>>> Sound like you’re working with the newest Matlab version, this gives me the same error message…
>>> I’d try installing an older Matlab version (2014a or earlier…)
>>> 
>>> Best,
>>> Rob
>>> 
>>> [cid:A9FA88C2-B65D-4705-A5CB-9E9084A2EAFE at uzh.ch]
>>> 
>>> Am 14.05.2015 um 16:39 schrieb Boomen, C. van den (Carlijn) <C.vandenBoomen at uu.nl <mailto:C.vandenBoomen at uu.nl><mailto:C.vandenBoomen at uu.nl <mailto:C.vandenBoomen at uu.nl>>>:
>>> 
>>> Dear Pankaj,
>>> 
>>> Thank you for your response. Yes, I tried that as well, and then I get the same error message.
>>> 
>>> Best,
>>> Carlijn
>>> 
>>> Dr. Carlijn van den Boomen | Departments of Developmental and Experimental Psychology | Utrecht University | Langeveld Building - room H039 | Heidelberglaan 1 | 3584 CS Utrecht | the Netherlands | phone: +31(30) 253 3386 | fax: +31(30) 253 4511
>>> ________________________________
>>> From: homer-users-bounces at nmr.mgh.harvard.edu <mailto:homer-users-bounces at nmr.mgh.harvard.edu><mailto:homer-users-bounces at nmr.mgh.harvard.edu <mailto:homer-users-bounces at nmr.mgh.harvard.edu>> [homer-users-bounces at nmr.mgh.harvard.edu <mailto:homer-users-bounces at nmr.mgh.harvard.edu><mailto:homer-users-bounces at nmr.mgh.harvard.edu <mailto:homer-users-bounces at nmr.mgh.harvard.edu>>] on behalf of Pankaj Gupta [beckman16 at gmail.com <mailto:beckman16 at gmail.com><mailto:beckman16 at gmail.com <mailto:beckman16 at gmail.com>>]
>>> Sent: Thursday, May 14, 2015 2:03 PM
>>> To: homer-users at nmr.mgh.harvard.edu <mailto:homer-users at nmr.mgh.harvard.edu><mailto:homer-users at nmr.mgh.harvard.edu <mailto:homer-users at nmr.mgh.harvard.edu>>
>>> Subject: Re: [Homer-users] (no subject)
>>> 
>>> Did you try to change the directory from the menu ? You can select the directory containing .nirs file.
>>> 
>>> Regards
>>> Pankaj
>>> 
>>> On Thu, May 14, 2015 at 7:01 PM, Boomen, C. van den (Carlijn) <C.vandenBoomen at uu.nl <mailto:C.vandenBoomen at uu.nl><mailto:C.vandenBoomen at uu.nl <mailto:C.vandenBoomen at uu.nl>>> wrote:
>>> Hi all,
>>> 
>>> I've installed Homer 2.2 (latest version) and try to open one of the sample files, but get the error below. The GUI opens fine, but the .nirs files seem not to open. It worked before on my macbook (10.6) but not on my current macbook (10.9.5). Does anyone know how I might solve this?
>>> 
>>> I've added Homer to my path and followed the youtube tutorial https://www.youtube.com/watch?v=a1jtsIEVHMY&feature=youtu.be <https://www.youtube.com/watch?v=a1jtsIEVHMY&feature=youtu.be> but get stuck at loading in the .nirs file.
>>> 
>>> Thanks a lot!
>>> 
>>> Best,
>>> Carlijn
>>> 
>>> error message:
>>> Undefined function 'not' for input arguments of type
>>> 'matlab.graphics.axis.Axes'.
>>> 
>>> Error in EasyNIRS_DisplayData (line 12)
>>> if ~displayAxes
>>> 
>>> Error in EasyNIRS>EasyNIRS_OpeningFcn (line 176)
>>> EasyNIRS_DisplayData();
>>> 
>>> Error in gui_mainfcn (line 220)
>>>    feval(gui_State.gui_OpeningFcn, gui_hFigure, [], guidata(gui_hFigure),
>>>    varargin{:});
>>> 
>>> Error in EasyNIRS (line 43)
>>>    gui_mainfcn(gui_State, varargin{:});
>>> 
>>> Error in Homer2_UI (line 3)
>>> EasyNIRS();
>>> 
>>> Dr. Carlijn van den Boomen | Departments of Developmental and Experimental Psychology | Utrecht University | Langeveld Building - room H039 | Heidelberglaan 1 | 3584 CS Utrecht | the Netherlands | phone: +31(30) 253 3386<tel:%2B31%2830%29%20253%203386> | fax: +31(30) 253 4511<tel:%2B31%2830%29%20253%204511>
>>> ________________________________
>>> 
>>> 
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>> 
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