[Homer-users] Atlas Viewer [Wrong Probe Projection & error messages]

[Tristin Nyman]

Hello all,

I am having similar difficulties with my probe projections. I downloaded
the previous 2012a version of Matlab, but it did not seem to resolve
anything. I attempted to replicate the simplest probe design from the
AtlasViewer paper without any luck either.

Is anyone else still having the same difficulties? Any advice, or
information, is greatly appreciated.

Thank you,
Tristin

On Wed, Sep 9, 2015 at 11:37 AM, Meryem Ayse Yucel <
mayucel at nmr.mgh.harvard.edu> wrote:

> Hi Hada,
>
> If you can send me your .SD file, I can have a look at it.
>
> In the meantime, can you try following the steps for the simplest probe
> design in section 3.1.1 in AtlasViewer paper (@ neurophotonics), and see
> if you can reproduce the same result in the paper?
>
> Meryem
>
>
>
> > Dear David & Adam,
> >
> > Thanks for asking. I tried to use Matlab 2012, but the problem has not
> > been
> > resolved. The array still projected in the OC, which should be on PFC.
> >
> > R2012 seemed to active the function of Sensitivity but not the Image
> > region. Advice? Thank you very much.
> >
> >
> > [image: Inline image 1]
> >
> > Sincerely,
> > Hada
> >
> >
> > On Tue, Sep 8, 2015 at 2:24 AM, David Boas <dboasma at gmail.com> wrote:
> >
> >> Hada,
> >> Did using Matlab 2012b or earlier work for you?
> >> David
> >>
> >> On Sep 2, 2015, at 1:10 PM, Adam Stone <adam.stone at gallaudet.edu>
> wrote:
> >>
> >> Dear Hada,
> >>
> >> I was having problems with AtlasViewer too and was told I should be
> >> using
> >> Matlab 2012b as newer versions are not supported -- try that and see if
> >> your errors continue?
> >>
> >> Best,
> >> Adam
> >>
> >>
> >>
> >> On Wed, Sep 2, 2015 at 9:59 AM, Hada Ieong <ihada at ufl.edu> wrote:
> >>
> >>> Hi all,
> >>>
> >>> I am using AltasViewer GUI v2.0 with Matlab2015a. I have encountered a
> >>> few problems.
> >>>
> >>> 1. After I designed a probe, I failed to register on the head surface
> >>> even though I cross stringed with a rigid shape, connected to anchor
> >>> points
> >>> through springs and used fixed length springs adjust the distance to
> >>> anchors at nearby reference points; however, all of my designed probes
> >>> are
> >>> always projected to the back of the head no matter what reference
> >>> points I
> >>> anchored. Does anyone have the same problem? There are the error
> >>> messages
> >>> pop up. As I attach in my email. Please help.
> >>>
> >>> 2. The Sensitivity Profile and the Image Recon are disabled. Why?
> >>>
> >>> 3. How to generate MC input manually?Did I somehow miss the MC
> >>> application from the Package?
> >>>
> >>> Any thoughts?? I hope I can hear something from you.
> >>> Thanks.
> >>>
> >>> Sincerely,
> >>> Hada Ieong
> >>> <image.png>
> >>>
> >>>
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> >>>
> >>>
> >>
> >>
> >> --
> >> Adam Stone
> >> PhD Candidate, Educational Neuroscience
> >> Petitto Brain & Language Laboratory for Neuroimaging (BL2)
> >> Gallaudet University | http://petitto.gallaudet.edu
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-- 
*Tristin Nyman* B.A.
Eastern Michigan University
Masters Student in Clinical Psychology
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