[Homer-users] homer1 vs homer2

Felicia Zhang yz6 at princeton.edu
Fri Jun 3 11:22:37 EDT 2016
Search archives:

Hi,

I am working on a project where I am reanalyzing data with homer2 that was preprocessed using homer1 but the signals look very different and I can’t seem to figure out what’s causing the discrepancy.

The raw data is the same so we are thinking it has something to do with preprocessing. I’ve attached the manual that I am using for preprocessing.
I’ve also attached graphs for a participant so you can get a sense of the difference. For Ss3, there are some channels that seem to have similar patterns when processed with homer1 and homer2, but there are some channels that look completely different.

In addition, the channels that look similar for homer1 and homer2 for this participant (e.g. ch13, ch16) look different for another participant (also attached - see Ss18)

Any suggestion is welcomed!

Thanks,
Felicia


[cid:ccaa0bcf-a614-4553-b9d4-4a1293a2fa21 at exchange.Princeton.EDU]
[cid:9046fd62-6e0f-489c-8b7a-24c5a9753f05 at exchange.Princeton.EDU]
[cid:0f2018da-1bfc-4683-b355-a5643489f7a2 at exchange.Princeton.EDU]
[cid:4596f6c7-a2cb-420f-af1a-b264ccd40fea at exchange.Princeton.EDU]
[cid:3109ba12-be51-48d2-a893-5ad61b0dc5c4 at exchange.Princeton.EDU]
[cid:d5d015f1-dc13-4f2a-9c4d-4f0e0ef71dc1 at exchange.Princeton.EDU]
[cid:23a9afbd-f062-46a4-a933-8c5007cbd60f at exchange.Princeton.EDU]
[cid:4ac4afdf-75e5-40ff-a55d-6ed8a7826dca at exchange.Princeton.EDU]
[cid:39c8b397-aa88-4e4a-9fff-354c95666c6a at exchange.Princeton.EDU]
[cid:54a5cbb7-dc6c-45e4-b950-9717ed48e6d5 at exchange.Princeton.EDU]
[cid:499be38c-574d-4512-9cc8-30aeb2622d69 at exchange.Princeton.EDU]
[cid:5a8f716d-65c0-46cb-98de-0cc7d80d377c at exchange.Princeton.EDU]
[cid:08506a76-eda7-49e2-bd30-19c3405e0776 at exchange.Princeton.EDU]
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://mail.nmr.mgh.harvard.edu/pipermail/homer-users/attachments/20160603/d82ce226/attachment-0001.html 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Ss3allchannels.jpg
Type: image/jpeg
Size: 72035 bytes
Desc: Ss3allchannels.jpg
Url : http://mail.nmr.mgh.harvard.edu/pipermail/homer-users/attachments/20160603/d82ce226/attachment-0013.jpg 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Ss3ch3.jpg
Type: image/jpeg
Size: 66788 bytes
Desc: Ss3ch3.jpg
Url : http://mail.nmr.mgh.harvard.edu/pipermail/homer-users/attachments/20160603/d82ce226/attachment-0014.jpg 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Ss3ch4.jpg
Type: image/jpeg
Size: 68838 bytes
Desc: Ss3ch4.jpg
Url : http://mail.nmr.mgh.harvard.edu/pipermail/homer-users/attachments/20160603/d82ce226/attachment-0015.jpg 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Ss3ch5.jpg
Type: image/jpeg
Size: 71512 bytes
Desc: Ss3ch5.jpg
Url : http://mail.nmr.mgh.harvard.edu/pipermail/homer-users/attachments/20160603/d82ce226/attachment-0016.jpg 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Ss3ch13.jpg
Type: image/jpeg
Size: 68756 bytes
Desc: Ss3ch13.jpg
Url : http://mail.nmr.mgh.harvard.edu/pipermail/homer-users/attachments/20160603/d82ce226/attachment-0017.jpg 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Ss3ch14.jpg
Type: image/jpeg
Size: 69631 bytes
Desc: Ss3ch14.jpg
Url : http://mail.nmr.mgh.harvard.edu/pipermail/homer-users/attachments/20160603/d82ce226/attachment-0018.jpg 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Ss3ch15.jpg
Type: image/jpeg
Size: 78581 bytes
Desc: Ss3ch15.jpg
Url : http://mail.nmr.mgh.harvard.edu/pipermail/homer-users/attachments/20160603/d82ce226/attachment-0019.jpg 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Ss3ch16.jpg
Type: image/jpeg
Size: 72884 bytes
Desc: Ss3ch16.jpg
Url : http://mail.nmr.mgh.harvard.edu/pipermail/homer-users/attachments/20160603/d82ce226/attachment-0020.jpg 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Ss3ch17.jpg
Type: image/jpeg
Size: 65185 bytes
Desc: Ss3ch17.jpg
Url : http://mail.nmr.mgh.harvard.edu/pipermail/homer-users/attachments/20160603/d82ce226/attachment-0021.jpg 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Ss3ch18.jpg
Type: image/jpeg
Size: 68033 bytes
Desc: Ss3ch18.jpg
Url : http://mail.nmr.mgh.harvard.edu/pipermail/homer-users/attachments/20160603/d82ce226/attachment-0022.jpg 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Ss3ch19.jpg
Type: image/jpeg
Size: 68928 bytes
Desc: Ss3ch19.jpg
Url : http://mail.nmr.mgh.harvard.edu/pipermail/homer-users/attachments/20160603/d82ce226/attachment-0023.jpg 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Ss18ch13.jpg
Type: image/jpeg
Size: 71840 bytes
Desc: Ss18ch13.jpg
Url : http://mail.nmr.mgh.harvard.edu/pipermail/homer-users/attachments/20160603/d82ce226/attachment-0024.jpg 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Ss18ch16.jpg
Type: image/jpeg
Size: 80331 bytes
Desc: Ss18ch16.jpg
Url : http://mail.nmr.mgh.harvard.edu/pipermail/homer-users/attachments/20160603/d82ce226/attachment-0025.jpg 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Homer 2 Preprocessing Pipeline.pdf
Type: application/pdf
Size: 697046 bytes
Desc: Homer 2 Preprocessing Pipeline.pdf
Url : http://mail.nmr.mgh.harvard.edu/pipermail/homer-users/attachments/20160603/d82ce226/attachment-0001.pdf 


More information about the Homer-users mailing list