[Mne_analysis] Cortical patches

[Matti Hamalainen]

Hi Gabriel,

On Jun 28, 2011, at 3:19 PM, obregon at nmr.mgh.harvard.edu wrote:

> Hi,
> 
> I've tried using the --dist option in the mne_add_patch_info program but
> it's not being recognized; the program doesn't run and prompts an error. I
> invoked help for this command (--help) and --dist isn't listed as a valid
> option, contrary to what the user guide for v2.7.3 states. How can I use
> this option?

You need to use the nightly build of MNE.

> 
> Also, I'm having trouble viewing the patches I create with both the
> formerly mentioned program or by using the --cps option within the source
> space creation.
> 
> How can I display the patches in mne_analyze. Additionally, how can I read
> the cortical patch statistics from the different patch files? Do I need to
> use the Matlab Toolbox for this purpose?

With the --w option to mne_add_patch_info you can produce w files which can be loaded to mne_analyze to show the patches.

> Finally, does anyone know if some of the vertices along the patch
> boundaries are shared between different patches?

No. Each vertex belongs to exactly one patch.

- Matti






---------

Matti Hamalainen, Ph.D.
Athinoula A. Martinos Center for Biomedical Imaging
Massachusetts General Hospital

msh at nmr.mgh.harvard.edu






-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20110628/86d65748/attachment.html