[Mne_analysis] Making .stc files for separate conditions

[dgw]

Here is the manual section. It may not be explicit enough in its 
explanation, but --set is what you are looking for. If you can come up 
with a better wording, you can re-write it through github. The entire 
manual is run through the mne-python project on github.

6.5.2Input files
--inv <name>
Load the inverse operator decomposition from here.
--meas <name>
Load the MEG or EEG data from this file.
--set <number>
The data set (condition) number to load. This is the sequential number
of the condition. You can easily see the association by looking at the 
condition list in mne_analyze when you load the file.

D

Stephen Politzer-Ahles wrote:
> Hello MNEers,
> 
> I am using mne_make_movie to make .stc files of current estimates. All 
> the examples I've seen so far use mne_make_movie with one inverse 
> operator (specified with --inv) and one MEG average file (with --meas). 
> But in my case, my average .fif file for each subject contains four 
> separate averages, one for each condition (so for example if i open 
> mne_analyze, load a surface, and load the .fif file using File/Open, I 
> then pick one of the four sets to display). So my question is, instead 
> of running mne_make_movie once per subject to make one .stc file, would 
> the appropriate procedure be to do it four times per subject, to get 
> separate stc files for each condition (using the --set option to specify 
> which condition to get from the .fif)?
> 
> Sorry if this is a basic question addressed in the manual somewhere; 
> maybe i just missed it. And thanks to everyone on the list who has 
> helped me before, I appreciate it very much!
> 
> Best,
> Steve Politzer-Ahles
> 
> -- 
> Stephen Politzer-Ahles
> University of Kansas
> Linguistics Department
> http://www.linguistics.ku.edu/
> 
> 
> ------------------------------------------------------------------------
> 
> _______________________________________________
> Mne_analysis mailing list
> Mne_analysis at nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
> 
> 
> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the e-mail
> contains patient information, please contact the Partners Compliance HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in error
> but does not contain patient information, please contact the sender and properly
> dispose of the e-mail.