[Mne_analysis] mne_make_movie

[Diana Omigie]

Hi Alex,
 its a strange path but yes, it does exist and I get a file in the folder
every time i run the function. However the jpg  does not open because 'it
is empty' and i am not able to attach it to this email for the same reason.

Diana

On Wed, Dec 5, 2012 at 9:28 AM, Alexandre Gramfort <
gramfort at nmr.mgh.harvard.edu> wrote:

> hi Diana,
>
> it says:
>
> Jpeg output
>
> /Users/bullshot/Desktop/stc/output.jpg
>
> so not where you think it should be saved. DOes the folder
> /Users/bullshot/Desktop/stc/ exist?
>
> Alex
>
> On Wed, Dec 5, 2012 at 12:06 AM, Diana Omigie <d.omigie at gmail.com> wrote:
> > Hi,
> >
> > I am trying to save images from an stc file using the code below.
> >
> > mne_make_movie \
> >     --subject fsaverage \
> >     --smooth 5 \
> >     --stcin '/Users/bullshot/Desktop/stc/
> > Grand_audiominusAV_dSPM_inv' \
> >     --tmin -200 \
> >     --tmax 600 \
> >     --tstep 100 \
> >     --pickrange \
> >     --noscalebar \
> >     --nocomments \
> >     --jpg '/Users/bullshot/Desktop/stc/Grand_audiominusAV_dSPM_inv.jpg' \
> >     --fthresh 0  --fmid 0.0666  --fmax 0.1
> >
> >
> > However I get an error saying 'no such file or directory' ( exact output
> > below) and obtain a jpg file that 'cannot be opened because it is
> empty'. I
> > would be grateful for any insights.
> >
> >
> > Diana
> >
> >
> >
> > mne_make_movie version 1.34 compiled at Dec 21 2009 19:51:06
> > Create movies and tif, rgb, jpeg, png, or w files  using a precomputed
> > inverse operator decomposition
> >
> > stc input file         :
> > /Users/bullshot/Desktop/stc/Grand_audiominusAV_dSPM_inv
> > JPEG output            : /Users/bullshot/Desktop/stc/output.jpg
> >                          The input stc file will be assumed to contain
> > current expectation value data
> > Subject                : fsaverage
> > Visualization surface  : inflated
> >                          Process both hemispheres
> > Magnification factor   : 1.00
> > Thresholding:
> >     fthresh           : 0.00
> >     fmid              : 0.07
> >     fslope            : 29.94
> >     fmax              : 0.10
> >
> > -------------------------------------------------------------------
> >
> > 600 x 400 off-screen rendering initialized.
> > Selected view called 'lat'
> >
> > -------------------------------------------------------------------
> >
> > read stc file
> /Users/bullshot/Desktop/stc/Grand_audiominusAV_dSPM_inv-lh.stc
> > read stc file
> /Users/bullshot/Desktop/stc/Grand_audiominusAV_dSPM_inv-rh.stc
> >
> > -------------------------------------------------------------------
> >
> > Loading inflated surfaces for subject fsaverage...
> >
> > Triangle file : created by nicks on Wed Aug 15 21:20:39 2007 nvert =
> 163842
> > ntri = 327680
> >     Triangle and vertex normals and neighboring triangles...[done]
> >     Vertex neighbors...[done]
> >     Distances between neighboring vertices...[983040 distances done]
> > Triangle file : created by nicks on Wed Aug 15 21:20:57 2007 nvert =
> 163842
> > ntri = 327680
> >     Triangle and vertex normals and neighboring triangles...[done]
> >     Vertex neighbors...[done]
> >     Distances between neighboring vertices...[983040 distances done]
> >
> > -------------------------------------------------------------------
> >
> > Parameters set.
> >
> > -------------------------------------------------------------------
> >
> > No movie production requested.
> >
> > -------------------------------------------------------------------
> >
> > Some timeframes selected. Outputting jpeg files (from stc files)
> >
> > MNE at t =     0.0 ms...lh : 0       .. 0       ave = 0       rh : 0
> > .. 0       ave = 0
> > system : No such file or directory
> >
> >
> >
> >
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> >
> >
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