[Mne_analysis] Functional labels for MNE
Platon Pronko
platon7pronko at gmail.com
Wed Oct 17 22:49:52 EDT 2012
Well, seems that I have an outdated version of Freesurfer - it says
"freesurfer-Linux-centos4_x86_64-stable-pub-v4.5.0". I'll try updating it.
On 10/17/2012 08:01 PM, Eric Larson wrote:
> Yeah, it must be some oddity with Freesurfer. We've been doing recon
> --all with Freesurfer x86_64 5.1.0 and our subjects have lh.BA.annot.
> If you figure it out, let us know!
>
> Eric
>
>
> On Wed, Oct 17, 2012 at 2:52 AM, Alexandre Gramfort
> <gramfort at nmr.mgh.harvard.edu <mailto:gramfort at nmr.mgh.harvard.edu>>
> wrote:
>
> ok then I don't know. I would ask the question on the freesurfer
> mailing list.
>
> Alex
>
> On Wed, Oct 17, 2012 at 11:50 AM, ffmpeg ffmpeg
> <platon7pronko at gmail.com <mailto:platon7pronko at gmail.com>> wrote:
> > I used
> >
> > recon-all -i $(ls | head -1) -s $SUBJECT
> > recon-all -autorecon-all -s $SUBJECT
> >
> > where $(ls | head -1) is the first image file.
> >
> > Docs for recon-all state that "-autorecon-all" is the same as
> "-all", so
> > that doesn't seem to be a problem.
> >
> > 2012/10/17 Alexandre Gramfort <gramfort at nmr.mgh.harvard.edu
> <mailto:gramfort at nmr.mgh.harvard.edu>>
> >>
> >> > And how can I obtain those files (lh.BA.annot)?
> >>
> >> you should have it if you used :
> >>
> >> recon-all -all …
> >>
> >> at least I have it for all my subjects
> >>
> >> Alex
> >>
> >>
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