[Mne_analysis] talairach transforms failed in COR.fif

[Ji Won Bang]

Dear. MNE users.

No worries..

Now I got the answer.

Thanks,
Ji Won

2013/1/30 Ji Won Bang <kirstens03 at gmail.com>

> Dear. MNE users.
>
> I have a question regarding talairach transform failure.
>
> When I run 'mne_setup_mri --subject $SUBJECT --overwrite',
> it says adding talairach transforms failed and talairach transforms will
> not be included into the output file, which is COR.fif.
>
> In addition, when I run 'mne_analyze' and load surface, it again says
> adding talairach transforms failed.
>
> To solve this issue (as MNE users have advised before), I have run,
>
> mri_add_xform_to_header -c \
> $SUBJECTS_DIR/$SUBJECT/mri/transforms/talairach.xfm \
> $SUBJECTS_DIR/$SUBJECT/mri/T1.mgz \
> $SUBJECTS_DIR/$SUBJECT/mri/T1.mgz
>
> This actually solved the failure issue with mne_analyze, but not the
> failure issue with mne_setup_mri. (why???)
>
> So I'm now wondering whether the COR.fif which does not include talairach
> transforms will be problematic when running mne_watershed_bem and
> forward/inverse solution..
>
> If not, I can ignore the talairach transform failure in COR.fif and move
> on to the next step with COR-'whoami'*.fif that I made. This
> COR-'whoami'*.fif has talairach transforms since I've run the
> mri_add_xform_to_header...
>
> Is there anyone who can give me some advice?
>
> I appreciate it in advance!
>
> Best,
> Ji Won Bang
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20130130/a29ae498/attachment.html