[Mne_analysis] hacking mne_setup_source_space

[David I Leitman]

Hi all,
 My colleague and I created a script to add subcortical structures like the amygdala and hippocampus surfaces  to the the white and pial freesurffer surfaces we call these modified surfaces cortex.  Our goal it to try to extend sources to these subcortical ROI's.

 We then try to execute: mne_setup_source_space --subject  $SUBJECT
--overwrite --surface cortex --ico 5 --cps

We get an error  at step 3 define cortical patches:

error : Node 18 does not belong to any of the patches.

Is there any way to resolve this error,  and  do source analysis on this extended brain surface?

thanks //dave

David I. Leitman PhD

Research Assistant Professor
Department of Psychiatry-
Neuropsychiatry program
Perelman School of Medicine
University of Pennsylvania
Gates Pavilion 10th floor room 1042
3400 Spruce St
Philadelphia, PA 19104-4283
P: (215) 662-7389
F: (215) 662-7903
E: leitman at mail.med.upenn.edu
Faculty page:	http://www.med.upenn.edu/apps/faculty/index.php/g275/p8174343
Lab website:
 http://davidileitman.com

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