[Mne_analysis] mne_make_movie and centOS 6
Burke Rosen
bqrosen at ucsd.edu
Mon Jul 28 15:04:38 EDT 2014
Hello, I am trying to save images with the following command:
mne_make_movie \
--pick 383 \
--integ 100 \
--subject fsaverage \
--fthresh 0.08 \
--fmid 0.11 \
--fmax 0.17 \
--stcin
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/stcfiles/SC_groupavg_group_a_cond_21_mean-ico7
\
--png
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/pngfiles_nolabel/test_ip82_SC_cong_a_0.08_0.11_0.17_mean_275_375
\
--view med \
--rh \
--qual 100 \
--nocomments \
--noscalebar \
--snr 5 \
--spm \
--smooth 10
When I run on my code on a centOS 5 machine it executes as expected and
produces the intended .png file. However, when I run the same code on a
centOS 6 machine, the output terminates with "system : No such file or
directory". Interestingly, an output file /is/ created with the correct
name in the correct directory, but this file is empty.
It appear a similar issue was reported once before, though it was not
resolved (and the OS comparison not made):
https://mail.nmr.mgh.harvard.edu/pipermail//mne_analysis/2012-December/001314.html
Below is the centOS 5 and centOS 6 output.
Thank you for your insight.
-Burke
*centOS5:*
mne_make_movie version 1.34 compiled at Dec 21 2009 19:48:23
Create movies and tif, rgb, jpeg, png, or w files using a precomputed
inverse operator decomposition
stc input file :
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/stcfiles/SC_groupavg_group_a_cond_21_mean-ico7
PNG output :
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/pngfiles_nolabel/test_ip82_SC_cong_a_0.08_0.11_0.17_mean_275_375
The input stc file will be assumed to contain
dSPM data
Subject : fsaverage
Visualization surface : inflated
Process right hemisphere only
Magnification factor : 1.00
Time integration : 100.0 ms
Thresholding:
fthresh : 0.08
fmid : 0.11
fslope : 16.67
fmax : 0.17
-------------------------------------------------------------------
600 x 400 off-screen rendering initialized.
Selected view called 'med'
-------------------------------------------------------------------
read stc file
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/stcfiles/SC_groupavg_group_a_cond_21_mean-ico7-lh.stc
read stc file
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/stcfiles/SC_groupavg_group_a_cond_21_mean-ico7-rh.stc
-------------------------------------------------------------------
Loading inflated surfaces for subject fsaverage...
Triangle file : created by nicks on Wed Aug 15 21:20:39 2007 nvert =
163842 ntri = 327680
Triangle and vertex normals and neighboring triangles...[done]
Vertex neighbors...[done]
Distances between neighboring vertices...[983040 distances done]
Triangle file : created by nicks on Wed Aug 15 21:20:57 2007 nvert =
163842 ntri = 327680
Triangle and vertex normals and neighboring triangles...[done]
Vertex neighbors...[done]
Distances between neighboring vertices...[983040 distances done]
-------------------------------------------------------------------
Parameters set.
-------------------------------------------------------------------
No movie production requested.
-------------------------------------------------------------------
Some timeframes selected. Outputting png files (from stc files)
dSPM at t = 383.0 ms...lh : -0.0202 .. 0.1664 ave = 0.03849 rh :
-0.02223 .. 0.1747 ave = 0.04297
produced png file
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/pngfiles_nolabel/test_ip82_SC_cong_a_0.08_0.11_0.17_mean_275_375-00383.0-med-rh.png
-------------------------------------------------------------------
No labels to process
-------------------------------------------------------------------
I think I responded favorably to all your requests. Good bye.
*centOS6:
*mne_make_movie version 1.34 compiled at Dec 21 2009 19:48:23
Create movies and tif, rgb, jpeg, png, or w files using a precomputed
inverse operator decomposition
stc input file :
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/stcfiles/SC_groupavg_group_a_cond_21_mean-ico7
PNG output :
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/pngfiles_nolabel/test_ip50_SC_cong_a_0.08_0.11_0.17_mean_275_375
The input stc file will be assumed to contain
dSPM data
Subject : fsaverage
Visualization surface : inflated
Process right hemisphere only
Magnification factor : 1.00
Time integration : 100.0 ms
Thresholding:
fthresh : 0.08
fmid : 0.11
fslope : 16.67
fmax : 0.17
-------------------------------------------------------------------
600 x 400 off-screen rendering initialized.
Selected view called 'med'
-------------------------------------------------------------------
read stc file
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/stcfiles/SC_groupavg_group_a_cond_21_mean-ico7-lh.stc
read stc file
/home/bqrosen/projects/simon/MEG/group/TF/SC/groupavg_maps_n15/stcfiles/SC_groupavg_group_a_cond_21_mean-ico7-rh.stc
-------------------------------------------------------------------
Loading inflated surfaces for subject fsaverage...
Triangle file : created by nicks on Wed Aug 15 21:20:39 2007 nvert =
163842 ntri = 327680
Triangle and vertex normals and neighboring triangles...[done]
Vertex neighbors...[done]
Distances between neighboring vertices...[983040 distances done]
Triangle file : created by nicks on Wed Aug 15 21:20:57 2007 nvert =
163842 ntri = 327680
Triangle and vertex normals and neighboring triangles...[done]
Vertex neighbors...[done]
Distances between neighboring vertices...[983040 distances done]
-------------------------------------------------------------------
Parameters set.
-------------------------------------------------------------------
No movie production requested.
-------------------------------------------------------------------
Some timeframes selected. Outputting png files (from stc files)
dSPM at t = 383.0 ms...lh : -0.0202 .. 0.1664 ave = 0.03849 rh :
-0.02223 .. 0.1747 ave = 0.04297
system : No such file or directory
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20140728/4d21b948/attachment.html
More information about the Mne_analysis
mailing list