[Mne_analysis] IOError: 2GB file size limit reached. Support for larger raw files will be added in the future.
Lau Møller Andersen
lau.andersen at cnru.dk
Wed Mar 19 15:44:04 EDT 2014
Thanks, Denis
That definitely looks useful.
I will try to implement that into the code tomorrow.
Thanks again
Den 19/03/2014 kl. 20.41 skrev Denis-Alexander Engemann <denis.engemann at gmail.com>:
> Hi folks,
>
> it just occurs to me that we might want to think about adding a Raw.split method.
>
> As a first quick and dirty solution, Lau, you might want think about a function that splits the raw object and saves each split to fif files.
>
> Something like this:
>
> def split_save_raw(raw, splits , fname_pattern):
> for i_split, (tmin, tmax) in enumerate(splits):
> raw.copy().crop(tmin, tmax).save(fname_pattern % i_split)
>
>
> split_save_raw(raw, [(0, 1), (1, 3), (3, 4)], 'my-split-%i-raw.fif')
>
> Re-construction should then be trivial.
>
> Cheers,
> Denis
>
>
>
> On Wed, Mar 19, 2014 at 7:56 PM, Lau Møller Andersen <lau.andersen at cnru.dk> wrote:
> Dear Eric and Alex
>
> Thanks for your answers. I now understand that it is not a simple issue.
> The files themselves are not greater than 2.0 GB, but because I have multiple recordings per subject, I read them in as a list. The only reason that I ask is that I would like to save the filtered file (i.e. the one that is greater than 2.0 GB, because it is a list of raw files).
>
> The way I work around it now, is simply to save the epoched files and working from there. The only annoying thing is, if/when I realize that I need to do something different for creating the epochs, then I need to do the time-consuming process of filtering again. But I can live with that.
>
> Thanks again for a wonderful python toolbox.
>
> Best
>
> Lau
>
>
> Den 19/03/2014 kl. 16.33 skrev Eric Larson <larson.eric.d at gmail.com>:
>
>> It is challenging because the FIFF file format is not designed to handle files larger than that. Adding support for it would require redesigning and rewriting the I/O code fundamental to data analysis, and would likely break backward compatibility with many tools. AFAIK nobody is actively working on the issue.
>>
>> There are different ways of working around the issue. If you have a specific use case, you could open an issue on the `mne-python` Github site, and perhaps we can provide some ideas. Ideally we could document the workarounds somewhere in case people hit this issue in the future, too.
>>
>> Eric
>>
>>
>>
>> On Wed, Mar 19, 2014 at 1:52 AM, Lau Møller Andersen <lau.andersen at cnru.dk> wrote:
>> Dear MNE developers
>>
>> Just out of curiosity, is this going to happen in the near future, or is
>> it a greater challenge than I imagine?
>>
>> Best
>>
>> Lau
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