[Mne_analysis] ds0017 anatomical pipeline

Mainak Jas mainakjas at gmail.com
Sun Dec 11 15:58:38 EST 2016
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Thanks for reporting this. I am cc-ing Jaakko who might be able to better
answer this question.

It appears to be an old freesurfer issue
Could you perhaps try on another system with a different operating system
and check if you still get the same error?


On Wed, Dec 7, 2016 at 7:36 PM, Casanova,Joaquin Jesus <jcasa at ufl.edu>

> Hi all, I'm having trouble with the anatomical pipeline here:
> http://mne-tools.github.io/mne-biomag-group-demo/auto_
> scripts/01-run_anatomy.html#sphx-glr-auto-scripts-01-run-anatomy-ipy
> When running mne.bem.convert_flash_mris, I get the following error:
> ---- Creating the parameter maps ----
> Running subprocess: mri_ms_fitparms mef05_6.mgz parameter_maps
> reading mef05_6.mgz...TE = 15.65, TR = 20.00, flip angle = 5.00
> MRIfree: null pointer
> which causes subsequent steps to fail.
> All the other steps in that example pipeline work well. Any tips? I've
> checked my environmental variables related to freesurfer and mne, as well
> as folder permissions, and I think everything is as it should be.
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