[Mne_analysis] Mne_analysis Digest, Vol 123, Issue 10

Alexandre Gramfort alexandre.gramfort at inria.fr
Fri Apr 13 09:43:29 EDT 2018
Search archives:

hi,

can you check that you can install any package with conda and pip?

your error does not seem to be specific to mne.

we have also now more recent install instructions :
http://martinos.org/mne/dev/install_mne_python.html

HTH
Alex

On Fri, Apr 13, 2018 at 3:15 PM, Shirsho Basu <basushirsankar at gmail.com> wrote:
> Hello Mne-Analysis-Group,
>
>          I'm currently using ubuntu 14.04, and am trying to install
> mne-python from the ubuntu terminal, invoking commands from the following
> link: https://www.martinos.org/mne/stable/install_mne_python.html.
> But, it's not getting done. Here, for you to debug, I'm giving a flowchart,
> and also attaching a screenshot of the error messages being issued against
> the commands I typed.
>
> A step-by-step flowchart of how I'm trying to install mne from ubuntu
> terminal:
>
>
> step-1: open the terminal.
> step-2: go to the directory where anaconda environment is installed invoking
> '$ cd anaconda3' command.
> step-3: Invoking the following command from terminal:
>            $ conda install scipy matplotlib scikit-learn mayavi jupyter
> spyder
> step-4: Invoking the second command from ubuntu terminal:
>            $pip install PySurfer mne
>
>
> But, everytime, Im writing these commands, error messages are flashing up on
> screen. Please, help.
> The screenshot of error messages are attached herewith.
>
> Thanking you in anticipation and expecting a reply at my earliest,
>
> Regards,
>
> Shirsho Basu.
>
>
> On Tue, Apr 10, 2018 at 12:35 PM, Shirsho Basu <basushirsankar at gmail.com>
> wrote:
>>
>>
>> ---------- Forwarded message ----------
>> From: <mne_analysis-request at nmr.mgh.harvard.edu>
>> Date: Wed, Apr 4, 2018 at 5:28 PM
>> Subject: Mne_analysis Digest, Vol 123, Issue 10
>> To: mne_analysis at nmr.mgh.harvard.edu
>>
>>
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>> Today's Topics:
>>
>>    1. problem in installing mne-Python from ubuntu 14.04        terminal
>>       (Shirsho Basu)
>>    2. Re: problem in installing mne-Python from ubuntu  14.04
>>       terminal (Alexandre Gramfort)
>>    3. Re: problem in installing mne-Python from ubuntu  14.04
>>       terminal (Eric Larson)
>>
>>
>> ----------------------------------------------------------------------
>>
>> Message: 1
>> Date: Wed, 4 Apr 2018 15:18:09 +0530
>> From: Shirsho Basu <basushirsankar at gmail.com>
>> Subject: [Mne_analysis] problem in installing mne-Python from ubuntu
>>         14.04   terminal
>> To: mne_analysis at nmr.mgh.harvard.edu
>> Message-ID:
>>
>> <CAG0CLUizb_Ev0BXrcVg1aiG3KDs15TAeX0tawDnzBkcXUeQpPw at mail.gmail.com>
>> Content-Type: text/plain; charset="utf-8"
>>
>> Hello Mne-analysis-Group,
>>
>>      I'm currently using ubuntu 14.04, and have already installed conda
>> environment and pip. And, the version of Python installed in ubuntu is
>> 3.6.3. But, now, I'm not being able to figure out how to install
>> mne-python
>> in ubuntu 14.04. I've tried the commands, from ubuntu terminal, written in
>> the following link many times.
>>
>> https://www.martinos.org/mne/stable/install_mne_python.html
>>
>> But, it's not getting done. Can anyone please tell me what is falling
>> short? Also, tell me how to go to root Anaconda environment from ubuntu
>> terminal. Any lead in this regard will be highly appreciated.
>>
>> Thanking you in anticipation and expecting a reply asap.
>>
>> Best regards,
>>
>> Shirsho Basu.
>> -------------- next part --------------
>> An HTML attachment was scrubbed...
>> URL:
>> http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20180404/f47b86eb/attachment-0001.html
>>
>> ------------------------------
>>
>> Message: 2
>> Date: Wed, 4 Apr 2018 13:33:31 +0200
>> From: Alexandre Gramfort <alexandre.gramfort at inria.fr>
>> Subject: Re: [Mne_analysis] problem in installing mne-Python from
>>         ubuntu  14.04 terminal
>> To: Discussion and support forum for the users of MNE Software
>>         <mne_analysis at nmr.mgh.harvard.edu>
>> Message-ID:
>>
>> <CADeotZqQNb7GM0TZTZ-dzN6-c1SGVQcYu137aQckUXDxzGkR_Q at mail.gmail.com>
>> Content-Type: text/plain; charset="utf-8"
>>
>> hi Shirsho,
>>
>> it's really hard to tell if we don't know what you see and what you typed.
>>
>> Once you have conda installed it does not matter what linux version you
>> have.
>>
>> Alex
>>
>>
>> On Wed, Apr 4, 2018 at 11:48 AM, Shirsho Basu <basushirsankar at gmail.com>
>> wrote:
>>
>> > Hello Mne-analysis-Group,
>> >
>> >      I'm currently using ubuntu 14.04, and have already installed conda
>> > environment and pip. And, the version of Python installed in ubuntu is
>> > 3.6.3. But, now, I'm not being able to figure out how to install
>> > mne-python
>> > in ubuntu 14.04. I've tried the commands, from ubuntu terminal, written
>> > in
>> > the following link many times.
>> >
>> > https://www.martinos.org/mne/stable/install_mne_python.html
>> >
>> > But, it's not getting done. Can anyone please tell me what is falling
>> > short? Also, tell me how to go to root Anaconda environment from ubuntu
>> > terminal. Any lead in this regard will be highly appreciated.
>> >
>> > Thanking you in anticipation and expecting a reply asap.
>> >
>> > Best regards,
>> >
>> > Shirsho Basu.
>> >
>> >
>> >
>> >
>> > _______________________________________________
>> > Mne_analysis mailing list
>> > Mne_analysis at nmr.mgh.harvard.edu
>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
>> >
>> >
>> > The information in this e-mail is intended only for the person to whom
>> > it
>> > is
>> > addressed. If you believe this e-mail was sent to you in error and the
>> > e-mail
>> > contains patient information, please contact the Partners Compliance
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>> An HTML attachment was scrubbed...
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>>
>> ------------------------------
>>
>> Message: 3
>> Date: Wed, 4 Apr 2018 07:58:10 -0400
>> From: Eric Larson <larson.eric.d at gmail.com>
>> Subject: Re: [Mne_analysis] problem in installing mne-Python from
>>         ubuntu  14.04 terminal
>> To: Discussion and support forum for the users of MNE Software
>>         <mne_analysis at nmr.mgh.harvard.edu>
>> Message-ID:
>>
>> <CAGu2niXC5bn+BayT8qjfFUiATsp=Tvv_4Oi-5+DF2uu5R-FmnQ at mail.gmail.com>
>> Content-Type: text/plain; charset="utf-8"
>>
>> Also, feel free to try our latest iteration of the Anaconda environment,
>> currently documented here until we release 0.16:
>>
>> https://www.martinos.org/mne/dev/install_mne_python.html
>>
>> Eric
>>
>>
>> On Wed, Apr 4, 2018 at 7:33 AM, Alexandre Gramfort <
>> alexandre.gramfort at inria.fr> wrote:
>>
>> > hi Shirsho,
>> >
>> > it's really hard to tell if we don't know what you see and what you
>> > typed.
>> >
>> > Once you have conda installed it does not matter what linux version you
>> > have.
>> >
>> > Alex
>> >
>> >
>> > On Wed, Apr 4, 2018 at 11:48 AM, Shirsho Basu <basushirsankar at gmail.com>
>> > wrote:
>> >
>> >> Hello Mne-analysis-Group,
>> >>
>> >>      I'm currently using ubuntu 14.04, and have already installed conda
>> >> environment and pip. And, the version of Python installed in ubuntu is
>> >> 3.6.3. But, now, I'm not being able to figure out how to install
>> >> mne-python
>> >> in ubuntu 14.04. I've tried the commands, from ubuntu terminal, written
>> >> in
>> >> the following link many times.
>> >>
>> >> https://www.martinos.org/mne/stable/install_mne_python.html
>> >>
>> >> But, it's not getting done. Can anyone please tell me what is falling
>> >> short? Also, tell me how to go to root Anaconda environment from ubuntu
>> >> terminal. Any lead in this regard will be highly appreciated.
>> >>
>> >> Thanking you in anticipation and expecting a reply asap.
>> >>
>> >> Best regards,
>> >>
>> >> Shirsho Basu.
>> >>
>> >>
>> >>
>> >>
>> >> _______________________________________________
>> >> Mne_analysis mailing list
>> >> Mne_analysis at nmr.mgh.harvard.edu
>> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
>> >>
>> >>
>> >> The information in this e-mail is intended only for the person to whom
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>> >> contains patient information, please contact the Partners Compliance
>> >> HelpLine at
>> >> http://www.partners.org/complianceline . If the e-mail was sent to you
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>> >> but does not contain patient information, please contact the sender and
>> >> properly
>> >> dispose of the e-mail.
>> >>
>> >>
>> >
>> > _______________________________________________
>> > Mne_analysis mailing list
>> > Mne_analysis at nmr.mgh.harvard.edu
>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
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>> > The information in this e-mail is intended only for the person to whom
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