[Mne_analysis] Using standard head

[Bear, Joshua]

Hi Vladimir, 

You should be able to make the BEM with freesurfer using mri_watershed or as a call within the MNE library to, I believe, mne_watershed_bem. See here: https://martinos.org/mne/dev/manual/appendix/bem_model.html <https://martinos.org/mne/dev/manual/appendix/bem_model.html>

I made the watershed BEM for fsaverage at some point, so I could also send you my output it you can’t get it to work.. 

If that is the only thing missing with following those slides, you should be good to go.

Regards,
Josh



Joshua Bear, MD, MA | Assistant Professor, Pediatric Neurology and Epilepsy
13123 East 16th Avenue, Box B-155 | Aurora, CO 80045 | Phone: 720-777-6138 | Fax: 720-777-7285 
 


> On Sep 18, 2018, at 4:34 AM, Vladimir Litvak <litvak.vladimir at gmail.com> wrote:
> 
>         External Email - Use Caution        
> 
> 
> Hi all,
> 
> What's the right sequence of steps when setting up a new subject with just MEG and no structural MRI? 
> 
> I've seen the slides at https://www.slideshare.net/mne-python/mnepython-scale-mri <https://www.slideshare.net/mne-python/mnepython-scale-mri> and they say one needs to select a subject folder and copy the fsaverage template to it. But to select a folder there should already be a BEM there as it looks from the code so it looks like catch 22. Or is there something I misunderstand?
> 
> Thanks,
> 
> Vladimir
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