[Mne_analysis] Lead field spikes using sample BEM - bug or explainable?
Eric Larson
larson.eric.d at gmail.com
Thu Feb 13 09:48:51 EST 2020
External Email - Use Caution
>
> The curious thing is that, when I view the co-registration with the
> 'head-dense' surface shown, it appears as though there are no collisions
> with the outer skin surface.
>
The BEM is made from a smoothed, downsampled version of this surface. If
you use `plot_alignment` and use `surfaces='head'` or
`surfaces='outer_skin'` it might show you that one instead.
> Do you know of a decent way to detect any sensor locations that are inside
> the outer skin BEM surface to avoid problems like this in the future?
>
You can use some private functions/classes
<https://github.com/mne-tools/mne-python/blob/master/mne/surface.py#L546-L590>
from `mne.surface` for this, with the caveat that the API is not guaranteed
(subject to change at any time without maintaining backward compatibility).
> Does the outer skin surface include things like the ears?
>
Yes it will but these will be smoothed in some fashion for the BEM.
Eric
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