[Mne_analysis] DICS with external sitmulus

[Mate Aller]

        External Email - Use Caution        

Dear Marijn,


Thank you very much, this is immensely helpful. I'll have a look and try it out.


Best wishes,

Mate


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From: mne_analysis-bounces at nmr.mgh.harvard.edu <mne_analysis-bounces at nmr.mgh.harvard.edu> on behalf of mne_analysis-request at nmr.mgh.harvard.edu <mne_analysis-request at nmr.mgh.harvard.edu>
Sent: 23 June 2020 05:22
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Subject: Mne_analysis Digest, Vol 149, Issue 28

Message: 3
Date: Tue, 23 Jun 2020 07:22:11 +0300
From: Marijn van Vliet <w.m.vanvliet at gmail.com>
Subject: Re: [Mne_analysis] DICS with external sitmulus
To: mne_analysis at nmr.mgh.harvard.edu, maria.hakonen at aalto.fi,
        Liljestr?m Mia <mia.liljestrom at aalto.fi>,       sara.tuomaala at aalto.fi
Message-ID: <cfb2c8e3-09c1-e032-0d0a-81eb6e1de4b6 at gmail.com>
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        External Email - Use Caution

Dear M?t?,


MNE-Python doesn't support this (yet). In our department, we are working
on an implementation of this, to be added to our DICS based connectivity
toolbox "conpy" (https://github.com/aaltoimaginglanguage/conpy). You can
check out the "external" branch of that repository, which contains our
work in progress code (in connectivity.py and check out the example in
examples/plot_coherence_ext_ref.py).


best,
Marijn.



On 22/06/2020 11:21, Mate Aller wrote:
>
> ????????External Email - Use Caution
>
> Dear All,
>
>
> I would like to source localize MEG coherence with an external
> stimulus (speech envelope) using DICS. This would be very similar to
> the cortico-muscular coherence analysis presented in the original DICS
> paper by Gross et al. (2001) PNAS. Digging through the MNE python
> tutorials, I couldn't find one for this analysis.
>
>
> This question has been posted to the mailing list before:
> https://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/2018-April/004883.htmlHowever,
> the provided responses in this thread point to an alternative solution
> instead of DICS.
>
>
> I was wondering if in the meantime this has been implemented in MNE
> python??Any help pointing me to the right direction would be greatly
> appreciated.
>
>
> Many thanks,
>
> M?t? Aller
>
>
> ________________________________
>
> Dr M?t? Aller, PhD
>
> MRC Cognition and Brain Sciences Unit
>
> University of Cambridge
>
> 15 Chaucer Rd
>
> Cambridge CB2 7EF
>
> United Kingdom
>
> www.mrc-cbu.cam.ac.uk<http://www.mrc-cbu.cam.ac.uk/<http://www.mrc-cbu.cam.ac.uk<http://www.mrc-cbu.cam.ac.uk/>>
>
>
>
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