[Mne_analysis] automating coregistration

[Alexandre Gramfort]

        External Email - Use Caution        

hi Fleur,

you can look at https://github.com/mne-tools/mne-python/pull/6693

Jon Houck in CC may be able to help you

Alex

On Wed, Mar 11, 2020 at 4:37 PM Fleur GAUDFERNAU
<fleur.gaudfernau at pasteur.fr> wrote:
>
>         External Email - Use Caution
>
> Hello,
>
> I have several EEG and MRI that I need to coregister. I use mne.gui.coregistration and I supply both the path to the MRI and the path to the EEG. The only thing I need to do after the opening of the window is click on "fit fiducials" (no rescaling the MRI or manually moving fiducials is necessary). Is there a way not to open the coregistration window and simply call the fit_fiducials function so that the coregistration is automated for all my subjects ?
>
> (I would still check that everything went well by plotting the alignment).
>
> NB : I'm running on windows and cannot call mne from a command line.
>
> _______________________________________________
> Mne_analysis mailing list
> Mne_analysis at nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis