[Mne_analysis] 4D neuroimaging data?

Fri May 20 04:33:52 EDT 2022

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Hi!

Would you mind posting your question at https://secure-web.cisco.com/15SGx0kC3n8qq2mf7nWASSr-v9nZDxP5ySZv3nJsuLOmo2Xfra9cBDD4nweIslfq_gJh_R-tuSUgVVCEtdlkvUbOCgKkjNDoi3uEcpex_GIZkVj8INpLldKaZof7Sd3zZSSh1bHiP9dopC0tHCBKVeHa0nGin8t4-jkvw65r_7kfj2yeApUir24wiBLLp6rSURZXw-X-yhYGHNJk7JKIZAxFmxjkN1M64V6F_Ta7pxZ3LHbLjbJ8kBHb-zOUqi_2kqeu5E9CaBEiGtPsGN_Bv8ZjPAYX287Uv8mPVAbhH843j2piQnQjIJGTVpkX0GdqGv64R9Dxkv68PyWPXWk4XYA/https%3A%2F%2Fmne.discourse.group%2F? This is our new forum with a lot more traffic and people than the mailing list, which only very few people still monitor.

Thanks,
Clemens

> On 20.05.2022, at 08:52, Karin Westin <karin.westin85 at gmail.com> wrote:
> 
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> 
> 
> Hi thank you for your answer.
> 
> I'd not think I have permission to share the data. However, I commented out the error in mne.io.meas_info line 1100-1103:
> 
>             #if not (isinstance(loc, np.ndarray) and loc.shape == (12,)):
>              #   raise TypeError(
>               #      'Bad info: info["chs"][%d]["loc"] must be ndarray with '
>                #     '12 elements, got %r' % (ci, loc))
> 
> Then I could actually create an info object. Going through info['chs'][i][loc] for all unused EEG channels I found that loc was set to None.  I manually set the location to [[0,0,1],[0,0,1],[0,0,1]] and now I can open and read the data!
> 
> Thank you for your help,
> Karin  
> 
> 
> Den tors 19 maj 2022 kl 16:37 skrev Alexandre Gramfort <alexandre.gramfort at inria.fr>:
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> 
> we need to make the reader robust to files where the EEG has not been digitized and no channel location
> is available.
> 
> can you share maybe a file with me?
> 
> Alex
> 
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