[Homer-users] Problems in opening Simple_Probe.nirs

[jdubb at nmr.mgh.harvard.edu]

If it only has SD then it's not a .nirs file.
HOMER2 only knows and loads files in the .nirs


Which means it has to have at least the following
variables

 t
 d
 SD
 s
 aux

See documentation on the HOMER2 website goes into
more detail about the .nirs format.

http://www.nmr.mgh.harvard.edu/PMI/resources/homer2/home.htm


Jay


> Thanks Meryem for your reply. I did as you advised and I can only see on variable: SD
>
>
> On 04 Mar 2013, at 20:42, "Meryem Ayse Yucel" <mayucel at nmr.mgh.harvard.edu> wrote:
>
>> Can you try loading your .nirs file in Matlab directly and see if you
>> actually have d, s etc?
>>
>> load Simple_Probe.nirs -mat
>>
>>
>>
>> Meryem
>>
>>> Dear List,
>>>
>>> I am trying to upload the sample data file (Simple_Probe.nirs) in Homer2
>>> but keep getting the following error message:
>>>
>>> Warning: Variable 'd' not found.
>>>> In checkNIRSFormat at 15
>>>  In getNIRSFileErrors at 8
>>>  In GetNIRSDataSet at 32
>>>  In EasyNIRS>EasyNIRS_OpeningFcn at 67
>>>  In gui_mainfcn at 221
>>>  In EasyNIRS at 43
>>>  In Homer2_UI at 3
>>> Warning: Variable 't' not found.
>>>> In checkNIRSFormat at 15
>>>  In getNIRSFileErrors at 8
>>>  In GetNIRSDataSet at 32
>>>  In EasyNIRS>EasyNIRS_OpeningFcn at 67
>>>  In gui_mainfcn at 221
>>>  In EasyNIRS at 43
>>>  In Homer2_UI at 3
>>> Warning: Variable 's' not found.
>>>> In checkNIRSFormat at 15
>>>  In getNIRSFileErrors at 8
>>>  In GetNIRSDataSet at 32
>>>  In EasyNIRS>EasyNIRS_OpeningFcn at 67
>>>  In gui_mainfcn at 221
>>>  In EasyNIRS at 43
>>>  In Homer2_UI at 3
>>> Warning: Variable 'aux' not found.
>>>> In checkNIRSFormat at 15
>>>  In getNIRSFileErrors at 8
>>>  In GetNIRSDataSet at 32
>>>  In EasyNIRS>EasyNIRS_OpeningFcn at 67
>>>  In gui_mainfcn at 221
>>>  In EasyNIRS at 43
>>>  In Homer2_UI at 3
>>> Warning: Variable 'procInput' not found.
>>>> In checkNIRSFormat at 15
>>>  In getNIRSFileErrors at 8
>>>  In GetNIRSDataSet at 32
>>>  In EasyNIRS>EasyNIRS_OpeningFcn at 67
>>>  In gui_mainfcn at 221
>>>  In EasyNIRS at 43
>>>  In Homer2_UI at 3
>>> ??? Reference to non-existent field 'errCoun'.
>>>
>>> Error in ==> getNIRSFileErrors at 16
>>>        flags(iF).errCount = flags(iF).errCoun+1;
>>>
>>> Error in ==> GetNIRSDataSet at 32
>>> [files filesErr] = getNIRSFileErrors(files);
>>>
>>> Error in ==> EasyNIRS>EasyNIRS_OpeningFcn at 67
>>> [files pathnm] = GetNIRSDataSet(handles);
>>>
>>> Error in ==> gui_mainfcn at 221
>>>    feval(gui_State.gui_OpeningFcn, gui_hFigure, [], guidata(gui_hFigure),
>>> varargin{:});
>>>
>>> Error in ==> EasyNIRS at 43
>>>    gui_mainfcn(gui_State, varargin{:});
>>>
>>> Error in ==> Homer2_UI at 3
>>> EasyNIRS();
>>>
>>> I am using Matlab R2011a Student Version running on a Macbook Pro Intel
>>> Core 2 Duo (OS X Version 10.8.2)
>>>
>>> Would anyone be able to pinpoint the mistake/s I am doing when trying to
>>> upload this file?
>>>
>>> Thanks and regards,
>>> Marco
>>> _______________________________________________
>>> Homer-users mailing list
>>> Homer-users at nmr.mgh.harvard.edu
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/homer-users
>>>
>>>
>>>
>>
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