[Homer-users] Batch processing using Homer and AtlasViewer ?

[David Boas]

Under the file menu, there is an “export processing script” option that creates a matlab script to perform the steps of the processing stream.

Homer2 is script based with a GUI wrapper on top of it. So, all of the processing steps are accessible by scripts.

In principle, the same is true for AtlasViewer, although the actions in AtlasViewer generally need a lot more user interactions.

David


> On Apr 26, 2015, at 10:16 PM, Pankaj Gupta <beckman16 at gmail.com> wrote:
> 
> Hi Homer users,
> Using Homer and AtlasViewer is a smooth process but in case we need to run the same commands for several datasets, running a batch script is much more convenient. Has anyone made such a script ?
> I am currently working to make such scripts for Homer and AtlasViewer but there are problems like automatically specifying parameters of a dropdown list etc.
> If anyone has their way around this, it would be great to have them shared and possibly be included in future release of Homer and AtlasViewer.
> 
> Kind regards
> Pankaj
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