[Homer-users] Batch processing using Homer and AtlasViewer ?

[Pankaj Gupta]

Thanks David!
Sure, you are right. It was easy for Homer2.
AtlasViewer is a bit tedious. I have managed to write batch scripts for it
though. I used the GUI calls (by passing callback function names and
handles to AtlasViewerGUI function). Anyway, batch script is working till
creating sensitivity profile.

Now trying to orient the Atlas (3D head) appropriately so that I can export
the figure. Any leads there would be helpful.

Thanks for your quick responses.


Regards
Pankaj

On Mon, Apr 27, 2015 at 6:47 PM, David Boas <dboas at nmr.mgh.harvard.edu>
wrote:

> Under the file menu, there is an “export processing script” option that
> creates a matlab script to perform the steps of the processing stream.
>
> Homer2 is script based with a GUI wrapper on top of it. So, all of the
> processing steps are accessible by scripts.
>
> In principle, the same is true for AtlasViewer, although the actions in
> AtlasViewer generally need a lot more user interactions.
>
> David
>
>
> > On Apr 26, 2015, at 10:16 PM, Pankaj Gupta <beckman16 at gmail.com> wrote:
> >
> > Hi Homer users,
> > Using Homer and AtlasViewer is a smooth process but in case we need to
> run the same commands for several datasets, running a batch script is much
> more convenient. Has anyone made such a script ?
> > I am currently working to make such scripts for Homer and AtlasViewer
> but there are problems like automatically specifying parameters of a
> dropdown list etc.
> > If anyone has their way around this, it would be great to have them
> shared and possibly be included in future release of Homer and AtlasViewer.
> >
> > Kind regards
> > Pankaj
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