[Mne_analysis] mne_volume_source_space with --mri option: segmentation fault

[Alexandre Gramfort]

hi Pavitra,

can you share the files on dropbox or something so we can have a look?
or maybe you can reproduce the problem on the MNE sample data?

Best,
Alex


On Tue, Jan 7, 2014 at 4:21 PM,  <pavitrak at nmr.mgh.harvard.edu> wrote:
> Hi all,
>
> I am trying to create a volume source space using a text file
> containing the source locations.  However, I get a segmentation fault
> (core dumped) error if I use the mri option.  The position file is in
> MRI (surface RAS) coordinates as recommended by the MNE manual.  Here
> is an example of the error -- this kind of error occurs regardless of
> what text file or MRI volume (T1/brain/brainmask etc) I give it.
>
> ----------------------------------------------------------------------------
> mne_volume_source_space --pos
> $SUBJECTS_DIR/$SUBJECT/src/subject_lmth.txt --mri T1.mgz --src
> $SUBJECTS_DIR/$SUBJECT/vol-src.fif
>
> mne_volume_source_space version 1.9 compiled at Dec 15 2009 08:55:40
>
> Source location file  :
> /autofs/cluster/purdonlab/users/pavitrak/sourceloc/Validation_Data/AEP/cparty_001/src/subject_lmth.txt
> Assuming input in millimeters
> Assuming input in MRI coordinates
> Output file           :
> /autofs/cluster/purdonlab/users/pavitrak/sourceloc/Validation_Data/AEP/cparty_001/bem/vol-src.fif
>
> Positions only (in millimeters)
> 150 sources
> Reading T1.mgz...[done]
> Setting up interpolation...Segmentation fault (core dumped)
> ----------------------------------------------------------------------------
>
> If I exclude the mri option the source-space file is created just fine
> -- so perhaps its a fault to do with the interpolation into the voxel
> space of the MRI volume.  But I need the interpolator matrix as I plan
> to use mne_volume_data2mri to create an overlay of time series
> estimates corresponding to these volume source spaces.  Why is this
> happening and is there any way to overcome/circumvent this problem?
>
> Thanks so much.
> Best Regards,
> Pavitra
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