Freesurfer July 2008

freesurfer@nmr.mgh.harvard.edu

55 participants
74 discussions

Start a nNew thread

(no subject)
by aburgos＠nmr.mgh.harvard.edu 01 Jul '08

01 Jul '08

aburgos(a)nmr.mgh.harvard.edu

1 0

Re: [Freesurfer] Massive recon-all.log files
by Sky Raptentsetsang 01 Jul '08

01 Jul '08

1 0

Re: [Freesurfer] deflate compression support
by Pedro Paulo de Magalhães Oliveira Junior 01 Jul '08

01 Jul '08

The problem is if the libtiff was compiled with zlib or not. I think it would be nice to rebuild your libtiff from ports: http://tiff.darwinports.com/ 2008/7/1 Jan Kalkus <jan.francis.kalkus(a)gmail.com>: > I have libtiff 3.8.2. > > On Jul 1, 2008, at 12:06 PM, Pedro Paulo de Magalhães Oliveira Junior > wrote: > > Some versions of LibTiff have the zlib compression support disabled. > > Do you have an older version of LibTiff in your Mac? > > 2008/7/1 Jan Kalkus <jan.francis.kalkus(a)gmail.com>: > >> Hi everyone, >> >> I'm trying to make a monkey template using mris_make_template. So >> far, every time I run the mris_make_template, I get this error: >> >> [jkalkus:~] work% /Volumes/Data/monkey_surface_data/mris_make >> creating new parameterization... >> >> processing subject bu_edited (1 of 1) >> reading spherical surface >> /Volumes/Data/monkey_surface_data//bu_edited/surf/rh.sphere... >> curvature mean = 0.000, std = 1.000 >> computing parameterization for surface >> /Volumes/Data/monkey_surface_data//bu_edited/surf/rh.inflated.H... >> curvature mean = 0.000, std = 0.592 >> computing parameterization for surface >> /Volumes/Data/monkey_surface_data//bu_edited/surf/rh.sulc... >> curvature mean = -0.100, std = 1.787 >> computing parameterization for surface >> /Volumes/Data/monkey_surface_data//bu_edited/surf/rh.smoothwm... >> writing updated template with 1 subjects to monk_temp0.tif... >> monk_temp0.tif: Deflate compression support is not configured. >> TiffWrite: TIFFWriteScanline returned error >> >> I am working on an intel MacBook with OS X 10.5.4 and I'm running >> freesurfer-Darwin-leopard-i686-stable-pub-v4.0.5. Has anyone else >> encountered this problem? Does anyone have any suggestions? Thanks >> >> - Jan Kalkus >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer(a)nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > > >

2 1

Application error
by Juergen Haenggi 01 Jul '08

01 Jul '08

Dear FS experts I used FS 4.0.3 on a Mac Intel. When I loaded several sig.mgh files as overlays in tksurfer and try to swich between them the following error occurred: can't read "gaHistoWidget(graph)": no such element in array can't read "gaHistoWidget(graph)": no such element in array while executing "Histo_Unzoom $gaHistoWidget(graph)" (procedure "SetOverlayField" line 37) invoked from within "SetOverlayField 1" invoked from within ".w.fwMouseover.fwLabels.fwkLabel_Val2.fwOverlay invoke" ("uplevel" body line 1) invoked from within "uplevel #0 [list $w invoke]" (procedure "tk::ButtonUp" line 22) invoked from within "tk::ButtonUp .w.fwMouseover.fwLabels.fwkLabel_Val2.fwOverlay" (command bound to event) What does it mean? At the beginning I could switch but when trying to switch back the above application error occurred. Thanks in advance Best regards Juergen ----------------------------------------------------------- Juergen Haenggi Ph.D. (Dr. des.) Division of Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi(a)psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website) -----------------------------------------------------------

1 0

2026

2025

2024

2023

2022

2021

2020

2019

2018

2017

2016

2015

2014

2013

2012

2011

2010

2009

2008

2007

2006

2005

2004

Freesurfer July 2008