Freesurfer January 2013

freesurfer@nmr.mgh.harvard.edu

111 participants
203 discussions

NIFTI q-factor in NIFTI header
by Jürgen Hänggi 11 Jan '13

11 Jan '13

Dear FS experts Please can you confirm that the NIFTI q-factor in the NIFTI header has to be negative (e.g. -1) in order to have correct right and left orientation. When the NIFTI q-factor is positive in my T1-w. and DTI images, then the left and the right hemisphere seem to be flipped. Thanks in advance Regards Jürgen Hänggi ---------------------------------------------------------------------------- Jürgen Hänggi, Ph.D. Division Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi[at]psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website) This e-mail (and any attachment/s) contains confidential and/or privileged information. If you are not the intended recipient (or have received this e-mail in error) please notify the sender immediately and destroy this e-mail. Any unauthorised copying, disclosure or distribution of the material in this e-mail is strictly forbidden. ----------------------------------------------------------------------------

2 2

Fw: Re: tksurfer - rotate surface with mouse
by jonwieser＠netzero.net 11 Jan '13

11 Jan '13

> I tried running freeview and it aborted > > psy-cerebrum-r1:data brainlab$ freeview -f rh.orig > > bus error > we are using a Mac Pro 2.26GHz 8 cores mac Os X 10.6.8 RAM : 12 GB with X11 and Xquartz > tkmedit works fine > > here's the problem report from our machine > > Process: freeview.bin [21698] > Path: /usr/local/freesurfer/bin/Freeview.app/Contents/MacOS/freeview.bin > Identifier: freeview.bin > Version: 'latest trunk' ('latest trunk') > Code Type: X86 (Native) > Parent Process: bash [555] > > Date/Time: 2013-01-11 09:16:52.146 -0600 > OS Version: Mac OS X 10.6.8 (10K549) > Report Version: 6 > > Interval Since Last Report: 2980979 sec > Crashes Since Last Report: 6 > Per-App Crashes Since Last Report: 4 > Anonymous UUID: 314FF2FE-43B0-4221-BF9A-F4428211ADA0 > > Exception Type: EXC_BAD_ACCESS (SIGBUS) > Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000000 > Crashed Thread: 0 Dispatch queue: com.apple.main-thread > > Thread 0 Crashed: Dispatch queue: com.apple.main-thread > 0 ??? 0000000000 0 + 0 > 1 libvtkRendering.5.2.dylib 0x02b3d1a9 vtkCarbonRenderWindow::CreateAWindow() + 281 > 2 libvtkRendering.5.2.dylib 0x02b3bfa4 vtkCarbonRenderWindow::WindowInitialize() + 52 > 3 libvtkRendering.5.2.dylib 0x02b3a435 vtkCarbonRenderWindow::Start() + 21 > 4 libvtkRendering.5.2.dylib 0x02aa11db vtkRenderWindow::DoStereoRender() + 27 > 5 libvtkRendering.5.2.dylib 0x02aa13a9 vtkRenderWindow::DoFDRender() + 153 > 6 libvtkRendering.5.2.dylib 0x02aa1832 vtkRenderWindow::DoAARender() + 98 > 7 libvtkRendering.5.2.dylib 0x02a9fc54 vtkRenderWindow::Render() + 644 > 8 freeview.bin 0x0011d547 wxVTKRenderWindowInteractor::OnPaint(wxPaintEvent&) + 151 > 9 freeview.bin 0x00407b53 wxAppConsole::HandleEvent(wxEvtHandler*, void (wxEvtHandler::*)(wxEvent&), wxEvent&) const + 65 > 10 freeview.bin 0x00452f30 wxEvtHandler::ProcessEventIfMatches(wxEventTableEntryBase const&, wxEvtHandler*, wxEvent&) + 212 > 11 freeview.bin 0x004532d4 wxEventHashTable::HandleEvent(wxEvent&, wxEvtHandler*) + 204 > 12 freeview.bin 0x00453f5e wxEvtHandler::ProcessEvent(wxEvent&) + 240 > 13 freeview.bin 0x003525e3 wxWindow::MacDoRedraw(void*, long) + 975 > 14 freeview.bin 0x00353985 wxMacWindowControlEventHandler(OpaqueEventHandlerCallRef*, OpaqueEventRef*, void*) + 815 > 15 freeview.bin 0x00354135 wxMacWindowEventHandler(OpaqueEventHandlerCallRef*, OpaqueEventRef*, void*) + 181 > 16 com.apple.HIToolbox 0x9527ac0f DispatchEventToHandlers(EventTargetRec*, OpaqueEventRef*, HandlerCallRec*) + 1567 > 17 com.apple.HIToolbox 0x95279ed6 SendEventToEventTargetInternal(OpaqueEventRef*, OpaqueEventTargetRef*, HandlerCallRec*) + 411 > 18 com.apple.HIToolbox 0x95279d35 SendEventToEventTargetWithOptions + 58 > 19 com.apple.HIToolbox 0x952a1e85 HIView::SendDraw(short, OpaqueGrafPtr*, __HIShape const*, CGContext*) + 475 > 20 com.apple.HIToolbox 0x952a17d9 HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 713 > 21 com.apple.HIToolbox 0x952a1a4c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 > 22 com.apple.HIToolbox 0x952a1a4c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 > 23 com.apple.HIToolbox 0x952a1a4c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 > 24 com.apple.HIToolbox 0x952a1a4c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 > 25 com.apple.HIToolbox 0x952a1a4c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 > 26 com.apple.HIToolbox 0x952a1a4c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 > 27 com.apple.HIToolbox 0x952a07ff HIView::DrawComposited(short, OpaqueGrafPtr*, __HIShape const*, unsigned long, HIView*, CGContext*) + 873 > 28 com.apple.HIToolbox 0x952a0445 HIView::Draw(short, OpaqueGrafPtr*, unsigned long) + 83 > 29 com.apple.HIToolbox 0x952a0395 HIView::Render(unsigned long, CGContext*) + 45 > 30 com.apple.HIToolbox 0x9529fcdd WindowData::PrepareForVisibility() + 145 > 31 com.apple.HIToolbox 0x9529f298 _ShowHideWindows + 291 > 32 com.apple.HIToolbox 0x953020e3 ShowWindow + 79 > 33 freeview.bin 0x00346f86 wxTopLevelWindowMac::Show(bool) + 280 > 34 freeview.bin 0x00072060 MainApp::CreateMainWindow() + 96 > 35 freeview.bin 0x000727b5 MainApp::InitializeGUI() + 581 > 36 freeview.bin 0x0007301a MainApp::OnInit() + 1898 > 37 freeview.bin 0x00076abf wxAppConsole::CallOnInit() + 15 > 38 freeview.bin 0x0042b70c wxEntry(int&, char**) + 110 > 39 freeview.bin 0x00071f87 main + 23 > 40 freeview.bin 0x00003406 start + 54 > > Thread 1: Dispatch queue: com.apple.libdispatch-manager > 0 libSystem.B.dylib 0x9a523382 kevent + 10 > 1 libSystem.B.dylib 0x9a523a9c _dispatch_mgr_invoke + 215 > 2 libSystem.B.dylib 0x9a522f59 _dispatch_queue_invoke + 163 > 3 libSystem.B.dylib 0x9a522cfe _dispatch_worker_thread2 + 240 > 4 libSystem.B.dylib 0x9a522781 _pthread_wqthread + 390 > 5 libSystem.B.dylib 0x9a5225c6 start_wqthread + 30 > > Thread 2: > 0 libSystem.B.dylib 0x9a522412 __workq_kernreturn + 10 > 1 libSystem.B.dylib 0x9a5229a8 _pthread_wqthread + 941 > 2 libSystem.B.dylib 0x9a5225c6 start_wqthread + 30 > > Thread 0 crashed with X86 Thread State (32-bit): > eax: 0x00f101a0 ebx: 0x02b187eb ecx: 0x00000000 edx: 0x00efbd68 > edi: 0x02b536f8 esi: 0x0439db10 ebp: 0xbfffc9f8 esp: 0xbfffc9cc > ss: 0x0000001f efl: 0x00010206 eip: 0x00000000 cs: 0x00000017 > ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 > cr2: 0x00000000 > > Binary Images: > 0x1000 - 0x622ff7 +freeview.bin 'latest trunk' ('latest trunk') <D46BB610-8C7E-9068-6317-4581178C2A87> /usr/local/freesurfer/bin/Freeview.app/Contents/MacOS/freeview.bin > 0xe83000 - 0xee0ffb +libGLU.1.dylib 1.3.0 (compatibility 1.3.0) <367FE206-843B-D4FA-26FF-7B331B4C05F3> /usr/X11/lib/libGLU.1.dylib > 0xef4000 - 0xf0eff7 +libGL.1.dylib 1.2.0 (compatibility 1.2.0) <7F3320E5-D405-1DEC-50A0-BDAF42276445> /usr/X11/lib/libGL.1.dylib > 0xf25000 - 0xf34fe7 +libXmu.6.dylib 9.0.0 (compatibility 9.0.0) <29D0559C-07A5-42B8-BC48-A20A2633FC02> /usr/X11/lib/libXmu.6.dylib > 0xf3d000 - 0xf78ff7 +libXt.6.dylib 7.0.0 (compatibility 7.0.0) <192EE611-7846-A32E-2799-A83C3270AD06> /usr/X11/lib/libXt.6.dylib > 0xf8e000 - 0xf92ff7 +libSM.6.dylib 7.0.0 (compatibility 7.0.0) <EF3EF10E-2712-E4DB-C6FD-F52F803782B2> /usr/X11/lib/libSM.6.dylib > 0xf97000 - 0xfa6ff7 +libICE.6.dylib 10.0.0 (compatibility 10.0.0) <B3AF126E-F513-940C-0B10-B41D7A215747> /usr/X11/lib/libICE.6.dylib > 0xfaf000 - 0xfb8ff7 +libXext.6.dylib 11.0.0 (compatibility 11.0.0) <04A8F778-CB07-8B2A-CD93-43CBCB92043A> /usr/X11/lib/libXext.6.dylib > 0xfbf000 - 0x10b3ff7 +libX11.6.dylib 9.0.0 (compatibility 9.0.0) <C982A508-21E9-7107-E94F-30503748BE22> /usr/X11/lib/libX11.6.dylib > 0x10d5000 - 0x10d7fe7 +libXdmcp.6.dylib 7.0.0 (compatibility 7.0.0) <CEC90676-9586-3160-1982-EBDCCFEED45A> /usr/X11/lib/libXdmcp.6.dylib > 0x10dc000 - 0x10ddff7 +libXau.6.dylib 7.0.0 (compatibility 7.0.0) <1BCAF459-79A1-7AA7-E476-51E2A90E5F3A> /usr/X11/lib/libXau.6.dylib > 0x10e1000 - 0x1106ff3 +libvtkverdict.vtk5.2.0.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkverdict.vtk5.2.0.dylib > 0x1110000 - 0x1663feb +libvtkGraphics.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkGraphics.5.2.dylib > 0x17e4000 - 0x1807fe0 +libvtkexpat.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkexpat.5.2.dylib > 0x180f000 - 0x1881fe4 +libvtkfreetype.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkfreetype.5.2.dylib > 0x1892000 - 0x18e1fff +libvtktiff.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtktiff.5.2.dylib > 0x18ec000 - 0x190bffb +libvtkjpeg.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkjpeg.5.2.dylib > 0x1912000 - 0x1976ff0 +libvtkmetaio.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkmetaio.5.2.dylib > 0x1999000 - 0x19bafef +libvtkpng.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkpng.5.2.dylib > 0x19c2000 - 0x19d2feb +libvtkzlib.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkzlib.5.2.dylib > 0x19d7000 - 0x1a5ffef +libvtksqlite.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtksqlite.5.2.dylib > 0x1a6a000 - 0x1d61ff7 +libvtkImaging.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkImaging.5.2.dylib > 0x1e26000 - 0x1ffefeb +libvtkFiltering.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkFiltering.5.2.dylib > 0x20f8000 - 0x22a4fe7 +libvtkCommon.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkCommon.5.2.dylib > 0x235f000 - 0x237eff2 +libvtksys.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtksys.5.2.dylib > 0x238d000 - 0x23b6fff +libvtkGenericFiltering.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkGenericFiltering.5.2.dylib > 0x23cc000 - 0x2412ff3 +libvtkexoIIc.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkexoIIc.5.2.dylib > 0x241a000 - 0x244bfff +libvtkNetCDF.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkNetCDF.5.2.dylib > 0x2456000 - 0x2797ff3 +libvtkVolumeRendering.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkVolumeRendering.5.2.dylib > 0x29c4000 - 0x2b9cfee +libvtkRendering.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkRendering.5.2.dylib > 0x2cf2000 - 0x2cf9fff +libvtkftgl.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkftgl.5.2.dylib > 0x2cff000 - 0x2e2ffff +libvtkWidgets.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkWidgets.5.2.dylib > 0x2ecb000 - 0x30c2ff7 +libvtkHybrid.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkHybrid.5.2.dylib > 0x3181000 - 0x34cdffb +libvtkIO.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkIO.5.2.dylib > 0x360b000 - 0x361dfe7 +libvtkDICOMParser.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkDICOMParser.5.2.dylib > 0x3629000 - 0x3635ff7 libXplugin.1.dylib ??? (???) <8C548953-0F07-0478-2B8C-6858CC8FC183> /usr/lib/libXplugin.1.dylib > 0x45e5000 - 0x45e6ff7 com.apple.textencoding.unicode 2.3 (2.3) <A7D310DB-A5E6-C834-F72F-A66453834CC0> /System/Library/TextEncodings/Unicode Encodings.bundle/Contents/MacOS/Unicode Encodings > 0x47b8000 - 0x47bcff7 com.apple.CommonCocoaPanels 4.0 (16) <0E766C21-37E4-C261-E76B-0FA2C7F50EE3> /System/Library/CoreServices/CommonCocoaPanels.bundle/Contents/MacOS/CommonCocoaPanels > 0x47d4000 - 0x47f8fe7 GLRendererFloat ??? (???) <F19DDBE8-1DF6-6618-F554-0E81ED85CE67> /System/Library/Frameworks/OpenGL.framework/Resources/GLRendererFloat.bundle/GLRendererFloat > 0xa000000 - 0xa07cfef +libtcl8.4.dylib 8.4.0 (compatibility 8.4.0) /usr/local/freesurfer/lib/tcltktixblt/lib/libtcl8.4.dylib > 0xb000000 - 0xb0a4fff +libtk8.4.dylib 8.4.0 (compatibility 8.4.0) <09A6AB57-49F3-62AD-8838-BFE610A8F33F> /usr/local/freesurfer/lib/tcltktixblt/lib/libtk8.4.dylib > 0x14000000 - 0x14179ff7 GLEngine ??? (???) <76C922AA-A4A7-2835-537B-17F316AD95F6> /System/Library/Frameworks/OpenGL.framework/Resources/GLEngine.bundle/GLEngine > 0x141ab000 - 0x145b0fe7 libclh.dylib 3.1.1 C (3.1.1) <15AD52DD-FC3F-305E-5C31-699329E8FDE1> /System/Library/Extensions/GeForceGLDriver.bundle/Contents/MacOS/libclh.dylib > 0x8f0c6000 - 0x8f811fff com.apple.GeForceGLDriver 1.6.36 (6.3.6) <3BB341B6-11A7-38AD-10A3-F89506FD40D4> /System/Library/Extensions/GeForceGLDriver.bundle/Contents/MacOS/GeForceGLDriver > 0x8fe00000 - 0x8fe4162b dyld 132.1 (???) <283EE026-C0FE-1FF9-DB81-BFB155793157> /usr/lib/dyld > 0x90003000 - 0x90047ff3 com.apple.coreui 2 (114) <1A3C3B7F-3837-6477-3114-47F6BFD56CB2> /System/Library/PrivateFrameworks/CoreUI.framework/Versions/A/CoreUI > 0x90048000 - 0x90054ff7 libkxld.dylib ??? (???) <9A441C48-2D18-E716-5F38-CBEAE6A0BB3E> /usr/lib/system/libkxld.dylib > 0x90055000 - 0x90126fe3 ColorSyncDeprecated.dylib 4.6.0 (compatibility 1.0.0) <C618942F-BC01-0565-18CF-477B63C02181> /System/Library/Frameworks/ApplicationServices.framework/Frameworks/ColorSync.framework/Versions/A/Resources/ColorSyncDeprecated.dylib > 0x90127000 - 0x9012bff7 libGIF.dylib ??? (???) <9E51F8ED-83B4-DA41-1E2F-CFA726936A30> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib > 0x9012c000 - 0x901d8fe7 com.apple.CFNetwork 454.12.4 (454.12.4) <DEDCD006-389F-967F-3405-EDF541F406D7> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CFNetwork.framework/Versions/A/CFNetwork > 0x90201000 - 0x9020ffe7 libz.1.dylib 1.2.3 (compatibility 1.0.0) <E1B922F4-23DC-467E-631F-7E1B9C9F51CB> /usr/lib/libz.1.dylib > 0x9021b000 - 0x9025cff7 libRIP.A.dylib 545.0.0 (compatibility 64.0.0) <80998F66-0AD7-AD12-B9AF-3E8D2CE6DE05> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libRIP.A.dylib > 0x90307000 - 0x9030eff7 com.apple.agl 3.0.12 (AGL-3.0.12) <46BD2265-78DC-2FAB-73C6-E224755C070D> /System/Library/Frameworks/AGL.framework/Versions/A/AGL > 0x9030f000 - 0x90373fff com.apple.htmlrendering 72 (1.1.4) <0D22B190-513B-7FF6-39FC-9D336285DE08> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HTMLRendering.framework/Versions/A/HTMLRendering > 0x90374000 - 0x9043ffef com.apple.CoreServices.OSServices 359.2 (359.2) <7C16D9C8-6F41-5754-17F7-2659D9DD9579> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices > 0x9055d000 - 0x912d5fe7 com.apple.WebCore 6534.57 (6534.57.2) <6AF29D9A-F549-5BE7-3842-CFF75FC46360> /System/Library/Frameworks/WebKit.framework/Versions/A/Frameworks/WebCore.framework/Versions/A/WebCore > 0x912f6000 - 0x912fcfff com.apple.CommonPanels 1.2.4 (91) <CE92759E-865E-8A3B-1488-ECD497E4074D> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels > 0x915f1000 - 0x9168cfe7 com.apple.ApplicationServices.ATS 275.19 (???) <2E83B3E9-AF39-36FC-5D05-CC1E952098AB> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS > 0x9168d000 - 0x916a2fff com.apple.ImageCapture 6.1 (6.1) <B909459A-EAC9-A7C8-F2A9-CD757CDB59E8> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture > 0x916ce000 - 0x916eafe3 com.apple.openscripting 1.3.1 (???) <0E6B81D1-C1BD-1B5F-836F-256E6701B5DE> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting > 0x91c8a000 - 0x91dc7fe7 com.apple.audio.toolbox.AudioToolbox 1.6.7 (1.6.7) <423BDE4D-5082-B6CA-BB2C-E22A037235A4> /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox > 0x91dc8000 - 0x91dfbff7 com.apple.AE 496.5 (496.5) <BF9673D5-2419-7120-26A3-83D264C75222> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE > 0x91e5f000 - 0x91e6aff7 libCSync.A.dylib 545.0.0 (compatibility 64.0.0) <287DECA3-7821-32B6-724D-AE03A9A350F9> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libCSync.A.dylib > 0x91ef5000 - 0x91f38ff7 com.apple.NavigationServices 3.5.4 (182) <FE19D51B-233A-69EC-9E36-B89D0EA438C1> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/NavigationServices.framework/Versions/A/NavigationServices > 0x91f39000 - 0x9219fff7 com.apple.security 6.1.2 (55002) <3FA54D69-5476-78DD-0AFC-D6697263890E> /System/Library/Frameworks/Security.framework/Versions/A/Security > 0x92356000 - 0x92391ffb libFontRegistry.dylib ??? (???) <19ED5DE0-D3AF-B229-9193-35D58FE377E5> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontRegistry.dylib > 0x92417000 - 0x92497feb com.apple.SearchKit 1.3.0 (1.3.0) <7AE32A31-2B8E-E271-C03A-7A0F7BAFC85C> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SearchKit.framework/Versions/A/SearchKit > 0x92498000 - 0x924a2fe7 com.apple.audio.SoundManager 3.9.3 (3.9.3) <DE0E0EF6-8190-3F65-6BDD-5AC9D8A025D6> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CarbonSound.framework/Versions/A/CarbonSound > 0x92b0d000 - 0x92c0ffe7 libcrypto.0.9.8.dylib 0.9.8 (compatibility 0.9.8) <015563C4-81E2-8C8A-82AC-31B38D904A42> /usr/lib/libcrypto.0.9.8.dylib > 0x92d50000 - 0x92d57ff3 com.apple.print.framework.Print 6.1 (237.1) <726A7F31-8C27-8403-0016-71E022EDC14C> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print > 0x92d58000 - 0x92d58ff7 com.apple.Carbon 150 (152) <8DD4F8DB-6DBD-1F65-F4EB-2981DBFDED50> /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon > 0x92d59000 - 0x92d59ff7 com.apple.CoreServices 44 (44) <B9461120-F72A-D28F-D0CF-5647958BD3F9> /System/Library/Frameworks/CoreServices.framework/Versions/A/CoreServices > 0x92d5a000 - 0x92f33fff libType1Scaler.dylib ??? (???) <04AF2B34-81D4-97E9-BD56-387D37C16F46> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libType1Scaler.dylib > 0x92f34000 - 0x92f53ff7 com.apple.CoreVideo 1.6.2 (45.6) <F9E52A13-E181-D302-3B0E-0799ED6D6130> /System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo > 0x92f54000 - 0x92fbefe7 libstdc++.6.dylib 7.9.0 (compatibility 7.0.0) <411D87F4-B7E1-44EB-F201-F8B4F9227213> /usr/lib/libstdc++.6.dylib > 0x92fbf000 - 0x92fbfff7 com.apple.vecLib 3.6 (vecLib 3.6) <FF4DC8B6-0AB0-DEE8-ADA8-7B57645A1F36> /System/Library/Frameworks/vecLib.framework/Versions/A/vecLib > 0x92fc0000 - 0x93042ffb SecurityFoundation ??? (???) <20512B7E-DC54-8242-B656-64DCA1BFB739> /System/Library/Frameworks/SecurityFoundation.framework/Versions/A/SecurityFoundation > 0x93043000 - 0x931befe7 com.apple.CoreFoundation 6.6.6 (550.44) <F88C95CD-1264-782D-A1F5-204739847E93> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation > 0x931f2000 - 0x93203ff7 com.apple.LangAnalysis 1.6.6 (1.6.6) <B59157A1-8796-CE8F-2508-EB96F093F6A7> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis > 0x93215000 - 0x93535ff3 com.apple.CoreServices.CarbonCore 861.39 (861.39) <5C59805C-AF39-9010-B8B5-D673C9C38538> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore > 0x9448a000 - 0x94564fff com.apple.DesktopServices 1.5.11 (1.5.11) <800F2040-9211-81A7-B438-7712BF51DEE3> /System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/DesktopServicesPriv > 0x94652000 - 0x9465cffb com.apple.speech.recognition.framework 3.11.1 (3.11.1) <90C38107-AEE7-AE55-5C51-28D129B19BCD> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition > 0x94733000 - 0x94747ffb com.apple.speech.synthesis.framework 3.10.35 (3.10.35) <9F5CE4F7-D05C-8C14-4B76-E43D07A8A680> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis > 0x94748000 - 0x94748ff7 com.apple.ApplicationServices 38 (38) <EAF1BC8C-4FD4-4300-B8F7-4B24E49125E2> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices > 0x94749000 - 0x947c3fff com.apple.audio.CoreAudio 3.2.6 (3.2.6) <156A532C-0B60-55B0-EE27-D02B82AA6217> /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio > 0x947c4000 - 0x94811feb com.apple.DirectoryService.PasswordServerFramework 6.1 (6.1) <9E35835E-BC33-F8EC-8F3B-84D51DEBDB16> /System/Library/PrivateFrameworks/PasswordServer.framework/Versions/A/PasswordServer > 0x94812000 - 0x94862fe7 libTIFF.dylib ??? (???) <E8B31850-BFD4-48E6-B264-A4340CD19929> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.dylib > 0x94edf000 - 0x94f2fff7 com.apple.framework.familycontrols 2.0.2 (2020) <592738FA-B093-279A-8D4E-3F76A21E2912> /System/Library/PrivateFrameworks/FamilyControls.framework/Versions/A/FamilyControls > 0x94fa0000 - 0x94fa0ff7 liblangid.dylib ??? (???) <FCC37057-CDD7-2AF1-21AF-52A06C4048FF> /usr/lib/liblangid.dylib > 0x94fa1000 - 0x94fc3fef com.apple.DirectoryService.Framework 3.6 (621.15) <F38894EA-2C13-7FC5-C084-94DA0B5B6B68> /System/Library/Frameworks/DirectoryService.framework/Versions/A/DirectoryService > 0x950f2000 - 0x95220fe7 com.apple.CoreData 102.1 (251) <0C2636F3-CCB4-5ED9-1D3E-5AE36BE57071> /System/Library/Frameworks/CoreData.framework/Versions/A/CoreData > 0x95273000 - 0x95597fef com.apple.HIToolbox 1.6.5 (???) <F21289A3-A00E-0BC3-66F1-7557862CE7EB> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox > 0x956fb000 - 0x95823fe7 com.apple.WebKit 6534.57 (6534.57.2) <4CB86278-4657-3503-8042-074628222DF3> /System/Library/Frameworks/WebKit.framework/Versions/A/WebKit > 0x95988000 - 0x95a30ffb com.apple.QD 3.36 (???) <5A93B258-3853-636F-DB26-223642DA2779> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/QD.framework/Versions/A/QD > 0x960ad000 - 0x960adff7 com.apple.Accelerate.vecLib 3.6 (vecLib 3.6) <ABF97DA4-3BDF-6FFD-6239-B023CA1F7974> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib > 0x960ae000 - 0x960b2ff7 IOSurface ??? (???) <7D8204CE-3FF9-27EC-A760-9321C44467A2> /System/Library/Frameworks/IOSurface.framework/Versions/A/IOSurface > 0x960b3000 - 0x961b3fe7 libxml2.2.dylib 10.3.0 (compatibility 10.0.0) <BE7FCD73-03B5-25A4-FCA4-D4980F1488D6> /usr/lib/libxml2.2.dylib > 0x961b7000 - 0x961cbfe7 libbsm.0.dylib ??? (???) <B328FA0A-899C-4FC4-F2AC-2FDC08819CD2> /usr/lib/libbsm.0.dylib > 0x961cc000 - 0x961deff7 com.apple.MultitouchSupport.framework 207.11 (207.11) <6FF4F2D6-B8CD-AE13-56CB-17437EE5B741> /System/Library/PrivateFrameworks/MultitouchSupport.framework/Versions/A/MultitouchSupport > 0x96238000 - 0x962f0feb libFontParser.dylib ??? (???) <D2D0C922-5ED1-3AE9-6F99-707C74DF3E62> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontParser.dylib > 0x96332000 - 0x963ebfe7 libsqlite3.dylib 9.6.0 (compatibility 9.0.0) <03186216-0A12-4AA9-D7BA-3E3551A1195C> /usr/lib/libsqlite3.dylib > 0x96475000 - 0x96477ff7 libRadiance.dylib ??? (???) <5F803B4A-B294-BA94-FB68-E8756EE41B20> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.dylib > 0x96478000 - 0x964d9fe7 com.apple.CoreText 151.13 (???) <23F359DA-D845-5C50-4DF3-19E858CF2B2C> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreText.framework/Versions/A/CoreText > 0x964da000 - 0x9651cff7 libvDSP.dylib 268.0.1 (compatibility 1.0.0) <1AE34B00-8A62-1E51-935F-BB3F0E4BE50F> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib > 0x9651d000 - 0x9669ffe7 libicucore.A.dylib 40.0.0 (compatibility 1.0.0) <50A70082-F800-93D8-1A7C-C95AAB1F352C> /usr/lib/libicucore.A.dylib > 0x966f9000 - 0x96b2eff7 libLAPACK.dylib 219.0.0 (compatibility 1.0.0) <4D2F47EF-BD32-1E3C-6A0A-438896ADE2BE> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib > 0x96be5000 - 0x96be6ff7 com.apple.TrustEvaluationAgent 1.1 (1) <06484720-AB50-6FD9-B5BF-05F5A640C9E5> /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Versions/A/TrustEvaluationAgent > 0x96bee000 - 0x96c9cff3 com.apple.ink.framework 1.3.3 (107) <E215794C-F3E9-C067-8882-9054796DDA8A> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink > 0x96c9d000 - 0x96cbdfe7 libresolv.9.dylib 41.1.0 (compatibility 1.0.0) <8C2B5FA8-2469-21C7-D297-F95A0FFE5F19> /usr/lib/libresolv.9.dylib > 0x96cbe000 - 0x974ad557 com.apple.CoreGraphics 1.545.0 (???) <1D9DC7A5-228B-42CB-7018-66F42C3A9BB3> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics > 0x974ae000 - 0x9755bfe7 libobjc.A.dylib 227.0.0 (compatibility 1.0.0) <9F8413A6-736D-37D9-8EB3-7986D4699957> /usr/lib/libobjc.A.dylib > 0x9755c000 - 0x9755fff7 libCGXType.A.dylib 545.0.0 (compatibility 64.0.0) <4D766435-EB76-C384-0127-1D20ACD74076> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libCGXType.A.dylib > 0x975ae000 - 0x9760bff7 com.apple.framework.IOKit 2.0 (???) <3DABAB9C-4949-F441-B077-0498F8E47A35> /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit > 0x9760c000 - 0x97eefff7 com.apple.AppKit 6.6.8 (1038.36) <A353465E-CFC9-CB75-949D-786F6F7732F6> /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit > 0x97ef0000 - 0x97f11fe7 com.apple.opencl 12.3.6 (12.3.6) <B774CF2D-C067-DFFE-3EE6-90A036E36E06> /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL > 0x97f49000 - 0x97fdbfe7 com.apple.print.framework.PrintCore 6.3 (312.7) <EE9ED7BE-7D97-B759-C063-1E4B7DBD3775> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/PrintCore.framework/Versions/A/PrintCore > 0x97fdc000 - 0x98000ff7 libJPEG.dylib ??? (???) <C43FD809-08B6-629D-8980-D7B0ECEA20A9> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.dylib > 0x98001000 - 0x9810dfe7 libGLProgrammability.dylib ??? (???) <6167CEB0-D8D6-C4D9-DD74-49755ADB540F> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib > 0x98252000 - 0x98253ff7 com.apple.audio.units.AudioUnit 1.6.7 (1.6.7) <93EC71F1-4D4E-F456-8EFE-32E7EFD7A064> /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit > 0x98642000 - 0x98722fe7 com.apple.vImage 4.1 (4.1) <AEF800AE-65DA-5E79-5B01-165AF51BAAF6> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage > 0x98723000 - 0x98766ff7 libGLU.dylib ??? (???) <6CC3CE6A-7024-C685-EADA-7F9DC27128E2> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib > 0x98767000 - 0x98a15fe7 com.apple.JavaScriptCore 6534.57 (6534.57.3) <5B18B308-DBB2-7133-DE56-494C2FA1848B> /System/Library/Frameworks/JavaScriptCore.framework/Versions/A/JavaScriptCore > 0x98a16000 - 0x98a69ff7 com.apple.HIServices 1.8.3 (???) <1D3C4587-6318-C339-BD0F-1988F246BE2E> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices > 0x98a6a000 - 0x98a6dffb com.apple.help 1.3.2 (41.1) <8AC20B01-4A3B-94BA-D8AF-E39034B97D8C> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Help.framework/Versions/A/Help > 0x98a6e000 - 0x98a71ff7 libCoreVMClient.dylib ??? (???) <37F56237-4ABA-E5B5-968D-70FFE357E8E0> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib > 0x98a94000 - 0x98a9fff7 libGL.dylib ??? (???) <3E34468F-E9A7-8EFB-FF66-5204BD5B4E21> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib > 0x98ad6000 - 0x98d47fef com.apple.Foundation 6.6.8 (751.63) <69B3441C-B196-F2AD-07F8-D8DD24E4CD8C> /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation > 0x98d48000 - 0x990b3ff7 com.apple.QuartzCore 1.6.3 (227.37) <E323A5CC-499E-CA9E-9BC3-537231449CAA> /System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore > 0x9923f000 - 0x992aeff7 libvMisc.dylib 268.0.1 (compatibility 1.0.0) <B3DEACA1-9375-CF8F-0898-AA2C5F8159DC> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib > 0x992af000 - 0x992f5ff7 libauto.dylib ??? (???) <7CB1AB76-50A2-8E56-66E4-CF51CA75B177> /usr/lib/libauto.dylib > 0x99302000 - 0x994c5feb com.apple.ImageIO.framework 3.0.6 (3.0.6) <5BF202E9-730A-3675-4374-E5300BC8ED10> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/ImageIO > 0x99513000 - 0x99515ff7 com.apple.securityhi 4.0 (36638) <A5F4B929-AEDE-2DFB-E02F-89CEC0940023> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI > 0x99516000 - 0x9955afe7 com.apple.Metadata 10.6.3 (507.15) <74F05E64-2A68-BA10-CCD4-128D164E5A0F> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata > 0x99686000 - 0x9971efe7 edu.mit.Kerberos 6.5.11 (6.5.11) <88CA2CC8-9005-E017-6D61-5809C3CE5FC6> /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos > 0x9971f000 - 0x9973dfe7 libPng.dylib ??? (???) <5B979A83-8CE7-6BD7-B84C-A2D1119B378D> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib > 0x9973e000 - 0x9976fff7 libGLImage.dylib ??? (???) <D18E2E76-DBF4-6930-039A-F66CA0D120B3> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib > 0x99791000 - 0x9979fff7 com.apple.opengl 1.6.14 (1.6.14) <82622F67-E032-0BF6-A78D-50B346E8D0FD> /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL > 0x997ec000 - 0x997f2fe7 com.apple.CommerceCore 1.0 (9.1) <521D067B-3BDA-D04E-E1FA-CFA526C87EB5> /System/Library/PrivateFrameworks/CommerceKit.framework/Versions/A/Frameworks/CommerceCore.framework/Versions/A/CommerceCore > 0x997f6000 - 0x9980eff7 com.apple.CFOpenDirectory 10.6 (10.6) <6D726EA4-67D2-E534-13A3-E3767BA59786> /System/Library/Frameworks/OpenDirectory.framework/Versions/A/Frameworks/CFOpenDirectory.framework/Versions/A/CFOpenDirectory > 0x9980f000 - 0x99818ff7 com.apple.DiskArbitration 2.3.1 (2.3.1) <AAE0185D-4A47-1833-27A3-03FDF734A3BA> /System/Library/Frameworks/DiskArbitration.framework/Versions/A/DiskArbitration > 0x9984f000 - 0x99877ff7 libxslt.1.dylib 3.24.0 (compatibility 3.0.0) <E761F29A-328B-29D9-3DF0-023F2C21E500> /usr/lib/libxslt.1.dylib > 0x998ca000 - 0x998f0ffb com.apple.DictionaryServices 1.1.2 (1.1.2) <5A8D5D84-06EB-F9B5-BA0A-A87A0A2C0035> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/DictionaryServices.framework/Versions/A/DictionaryServices > 0x998f1000 - 0x99bebfef com.apple.QuickTime 7.6.6 (1791) <8E56F3DC-725B-0299-7E62-8599CA6EC4C0> /System/Library/Frameworks/QuickTime.framework/Versions/A/QuickTime > 0x99bec000 - 0x99beffe7 libmathCommon.A.dylib 315.0.0 (compatibility 1.0.0) <1622A54F-1A98-2CBE-B6A4-2122981A500E> /usr/lib/system/libmathCommon.A.dylib > 0x99bf0000 - 0x99c00ff7 libsasl2.2.dylib 3.15.0 (compatibility 3.0.0) <E276514D-394B-2FDD-6264-07A444AA6A4E> /usr/lib/libsasl2.2.dylib > 0x99c01000 - 0x99c01ff7 com.apple.Accelerate 1.6 (Accelerate 1.6) <3891A689-4F38-FACD-38B2-4BF937DE30CF> /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate > 0x99c02000 - 0x99c07ff7 com.apple.OpenDirectory 10.6 (10.6) <7E8AFE74-1FA9-7B35-A0E3-545959A9CA73> /System/Library/Frameworks/OpenDirectory.framework/Versions/A/OpenDirectory > 0x99c46000 - 0x99ce3fe3 com.apple.LaunchServices 362.3 (362.3) <15B47388-16C8-97DA-EEBB-1709E136169E> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices > 0x9a158000 - 0x9a15cff7 libGFXShared.dylib ??? (???) <09540618-2ED1-72C4-61CB-938B35927568> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib > 0x9a16e000 - 0x9a16eff7 com.apple.Cocoa 6.6 (???) <5A785062-1ABB-2A54-BAAC-8FEF95275E05> /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa > 0x9a16f000 - 0x9a263ff7 libiconv.2.dylib 7.0.0 (compatibility 7.0.0) <475AEF89-91A5-5100-8662-DA508D3830E9> /usr/lib/libiconv.2.dylib > 0x9a441000 - 0x9a47eff7 com.apple.SystemConfiguration 1.10.8 (1.10.2) <50E4D49B-4F61-446F-1C21-1B2BA814713D> /System/Library/Frameworks/SystemConfiguration.framework/Versions/A/SystemConfiguration > 0x9a47f000 - 0x9a4b2fff libTrueTypeScaler.dylib ??? (???) <8ADB7D19-413E-4499-C874-13C383F97685> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libTrueTypeScaler.dylib > 0x9a4fc000 - 0x9a6a3ff7 libSystem.B.dylib 125.2.11 (compatibility 1.0.0) <2DCD13E3-1BD1-6F25-119A-3863A3848B90> /usr/lib/libSystem.B.dylib > 0x9a6a4000 - 0x9a6b1ff7 com.apple.NetFS 3.2.2 (3.2.2) <0A53CD10-DBC7-2BE8-34F7-354BE201F6FB> /System/Library/Frameworks/NetFS.framework/Versions/A/NetFS > 0x9a6b2000 - 0x9a6ecff7 libcups.2.dylib 2.8.0 (compatibility 2.0.0) <A6C207E3-7B42-926D-9C93-BE3F50B92496> /usr/lib/libcups.2.dylib > 0x9a6ed000 - 0x9a7a9fff com.apple.ColorSync 4.6.8 (4.6.8) <920DD017-8B41-7334-E554-A85DB99EBD5A> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync > 0x9a7aa000 - 0x9abc0ff7 libBLAS.dylib 219.0.0 (compatibility 1.0.0) <9D89FCB3-24C9-8FCF-DB49-27B184AC3222> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib > 0xffff0000 - 0xffff1fff libSystem.B.dylib ??? (???) <2DCD13E3-1BD1-6F25-119A-3863A3848B90> /usr/lib/libSystem.B.dylib > > Model: MacPro4,1, BootROM MP41.0081.B07, 8 processors, Quad-Core Intel Xeon, 2.26 GHz, 12 GB, SMC 1.39f5 > Graphics: NVIDIA GeForce GT 120, NVIDIA GeForce GT 120, PCIe, 512 MB > Memory Module: global_name > AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x8E), Broadcom BCM43xx 1.0 (5.10.131.42.4) > Bluetooth: Version 2.4.5f3, 2 service, 19 devices, 1 incoming serial ports > Network Service: Ethernet, Ethernet, en0 > PCI Card: NVIDIA GeForce GT 120, sppci_displaycontroller, Slot-1 > Serial ATA Device: HL-DT-ST DVD-RW GH41N, 283.3 MB > Serial ATA Device: WDC WD1001FALS-41K1B0, 931.51 GB > USB Device: Keyboard Hub, 0x05ac (Apple Inc.), 0x1006, 0xfd300000 / 2 > USB Device: Apple Optical USB Mouse, 0x05ac (Apple Inc.), 0x0304, 0xfd330000 / 4 > USB Device: Apple Keyboard, 0x05ac (Apple Inc.), 0x0220, 0xfd320000 / 3 > USB Device: USB 3.0 SATA Bridge, 0x2109 (VIA Labs, Inc.), 0x0700, 0xfa200000 / 2 > USB Device: BRCM2046 Hub, 0x0a5c (Broadcom Corp.), 0x4500, 0x5a100000 / 2 > USB Device: Bluetooth USB Host Controller, 0x05ac (Apple Inc.), 0x8215, 0x5a110000 / 3 > FireWire Device: built-in_hub, Up to 800 Mb/sec > > > Jon Wieser > jonwieser(a)netzero.com > > "When the going gets tough, switch to power tools." - Red Green > > ---------- Original Message ---------- > From: Bruce Fischl <fischl(a)nmr.mgh.harvard.edu> > To: "jonwieser(a)netzero.net" <jonwieser(a)netzero.net> > Cc: freesurfer(a)nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] tksurfer - rotate surface with mouse > Date: Fri, 11 Jan 2013 09:00:27 -0500 (EST) > > Hi Jon > > glad to see you are now able to post :>. No, I don't think you can do > this in tksurfer due to its age and slow redraw rate. Freeview can do it > though. > > cheers > Bruce > On Fri, 11 Jan 2013, jonwieser(a)netzero.net wrote: > >> >> Is it possible to rotate the surface model in tksurfer >> with the mouse instead of the rotation buttons on the GUI. (i.e. grab the surface model >> with the mouse and spin it) >> >> Jon Wieser >> jonwieser(a)netzero.com >> >> "When the going gets tough, switch to power tools." - Red Green >> >> ____________________________________________________________ >> NetZero now offers 4G mobile broadband. Sign up now. >> http://www.netzero.net/?refcd=NZINTISP0512T4GOUT1 >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer(a)nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and properly > dispose of the e-mail. > > > ____________________________________________________________ > Woman is 53 But Looks 25 > Mom reveals 1 simple wrinkle trick that has angered doctors... > http://thirdpartyoffers.netzero.net/TGL3241/50f02f62991ae2f623b62st01duc > > >

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tksurfer - rotate surface with mouse
by jonwieser＠netzero.net 11 Jan '13

11 Jan '13

Is it possible to rotate the surface model in tksurfer with the mouse instead of the rotation buttons on the GUI. (i.e. grab the surface model with the mouse and spin it) Jon Wieser jonwieser(a)netzero.com "When the going gets tough, switch to power tools." - Red Green ____________________________________________________________ NetZero now offers 4G mobile broadband. Sign up now. http://www.netzero.net/?refcd=NZINTISP0512T4GOUT1

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recon-all error
by ZhiLiangLong 10 Jan '13

10 Jan '13

Hi everyone: I am using freesurfer 5.1.0 to run my own data to compute cortical thickness in VirtualBox. When it runs the command: "mri_aparc2aseg --s chong_lan --labelwm --hypo-as-wm --rip-unknown --volmask --o mri/wmparc.mgz --ctxseg aparc+aseg.mgz ", it got errors("mghRead(/mnt/hgfs/DATA/Freesurfer/chong_lan/mri/aparc+aseg.mgz): could not read 262144 bytes at slice 184"). I have no idea how to make it correct. I need help. The detials are in the attachment.

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FreeSurfer problem on VirtualBox Linux
by Carissa Nadia Kuswanto (IMH) 10 Jan '13

10 Jan '13

Hi there, My operating system is Windows XP SP3 and it has been loaded with VirtualBox 4.2.6 for Windows hosts and we would like to run freesurfer-Virtualbox-linux-x86-stable-pub-v5.1.0-full.vdi. But when we attempt to launch FreeSurfer, the terminal seems to hang with the following message: GRUB loading stage 1.5 GRUB loading, please wait... Would you kindly help us on how to overcome this problem? I thank you in advance for your kind attention. Best regards, Carissa ________________________________ The information contained in this e-mail and the attachments (if any) may be privileged and confidential and is intended solely for the named addressee. If you are not the intended recipient, please do not print, retain copy, disseminate, distribute, or use this e-mail or any part thereof. Please notify the sender immediately by replying to this e-mail and delete all copies of this e-mail and the attachments.

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Re: [Freesurfer] freesurfer question
by Bruce Fischl 10 Jan '13

10 Jan '13

Hi Catherine can you clarify? Are you getting them properly segmented in the aseg? Is this a disease population? There are a bunch of things going on in the images you sent, although it's hard to be sure from a single slice. It looks like your bandwidth is low enough that you are getting a lot of signal pileup in temporal regions. There also appear to be cortical lesions. Bruce On Thu, 10 Jan 2013, Catherine Bois wrote: > Ps. I have attached a few screenshots of the problem we are experiencing, to > clarify. We are also getting large areas of hyper-intensive white matter too. > > > Quoting Bruce Fischl <fischl(a)nmr.mgh.harvard.edu> on Wed, 9 Jan 2013 08:52:08 > -0500 (EST): > >> Hi Catherine >> >> what version are you running? We have a fix in 5.2 that helps this problem. >> It's not quite out yet, but you could download a beta if you want >> >> cheers >> Bruce >> >> On Wed, 9 Jan 2013, Catherine Bois wrote: >> >>> Hi, >>> >>> I am currently editing some scans (ie adding control points etc), >>> however I keep finding that after the editing often the brains look >>> "worse" than they did before; especially the medial temporal lobe >>> area. I have taken care not to put too many control points in/made >>> sure not to place them in partial volume areas, and only in areas that >>> are clearly excluded white matter. This problem has happened >>> repeatedly, yet looking at scans that my colleagues have edited (some >>> with up to 2000 control points) this problem does not occur. Has this >>> happened before, is it the software "malfunctioning" in some way? >>> >>> Thank you very much for your reply, >>> >>> >>> >>> >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> > > > >

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Re: [Freesurfer] Tracula preprocessing step error
by Allison Gruber 10 Jan '13

10 Jan '13

Hi Anastasia, Thanks so much for your help. I was able to correct this problem in my configuration file. I have now run into another error- "bvecs and bvals don't have the same number of entries." I have read other postings about this error and can see that my bvec file is not formatted correctly when I import into Excel. However, I am not sure how to correctly fix this formatting. I know that I have 28 bval entries and 84 bvec entries, so the overall number is correct. I am just unclear on how to fix the formatting of the bvec file so that it corresponds correctly to the ordering in the bval file (which order the bvec entries should appear in within the three columns). Do you have any resources on this? Thank you again for your help, Allison Quoting Anastasia Yendiki <ayendiki(a)nmr.mgh.harvard.edu>: > > Hi Allison - The mri_convert command at the top of your log file is > trying to convert the directory /Users/Desktop/Tracula/diffusion_DTI to > a nifti file. From the name of that nifti file, it looks like it's > expecting to find a field map and not finding it. > > Hope this helps, > a.y > > On Tue, 8 Jan 2013, Allison Gruber wrote: > >> Dear Freesurfer experts, >> >> I have encountered the following error while running the tracula >> pre-processing command and was hoping you could help me understand how >> to correct this. >> >> Selection from log: >> >> mri_convert /Users/Desktop/Tracula/diffusion_DTI/ >> /Users/Desktop/Tracula/diffusion_DTI/SubjectX/dmri/b0mag.nii.gz >> mri_convert /Users/Desktop/Tracula/diffusion_DTI/ >> /Users/Desktop/Tracula/diffusion_DTI/SubjectX/dmri/b0mag.nii.gz >> corRead(): can't open file /Users/Desktop/Tracula/diffusion_DTI/COR-.info >> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ >> reading from /Users/Desktop/Tracula/diffusion_DTI/... >> Darwin MacBook-Pro.local 11.4.0 Darwin Kernel Version 11.4.0: Mon Apr >> 9 19:32:15 PDT 2012; root:xnu-1699.26.8~1/RELEASE_X86_64 x86_64 >> >> trac-preproc exited with ERRORS at Tue Jan 8 14:34:39 EST 2013 >> >> Please let me know if this is not enough information. Thank you for >> your help. >> >> Allison >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer(a)nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail.

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problem with preprocessing
by Maryam Vaziri Pashkam 09 Jan '13

09 Jan '13

Hi Doug, I am running preprocessing on freesurfer 5.1 using this line: preproc-sess -s 121210_xu_Object4catmod_10 -df sessdir -per-run -sliceorder siemens -fsd bold -fwhm 0 -mni305-2mm -surface self lhrh -force and I get a "Segmentation fault " error. Here is part of the output with the error: .... mri_segreg --mov bold/007/tmp.bbregister.28256/template.nii --init-reg bold/007/tmp.bbregister.28256/reg.init.dat --out-reg bold/007/tmp.bbregister.28256/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.103 2011/03/02 00:04:24 nicks Exp $ setenv SUBJECTS_DIR /ncf/vcn/Maryam/mri-space/subjects cd /ncf/vcn/Maryam/mri-space/studies/Obj4cat_mod/unpackdata/121210_xu_Object4catmod_10 mri_segreg --mov bold/007/tmp.bbregister.28256/template.nii --init-reg bold/007/tmp.bbregister.28256/reg.init.dat --out-reg bold/007/tmp.bbregister.28256/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Linux hostname ncfws09.rc.fas.harvard.edu machine x86_64 user mvpashkam movvol bold/007/tmp.bbregister.28256/template.nii regfile bold/007/tmp.bbregister.28256/reg.init.dat subject green_alligator_kcb dof 6 outregfile bold/007/tmp.bbregister.28256/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1358526945 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 -0.007 0.027 -1.374; -0.026 0.032 0.999 -28.956; 0.008 0.999 -0.032 7.006; 0.000 0.000 0.000 1.000; Loading mov Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Segmentation fault I have attached the full log file. I am not sure where the problem is. The anatomical data of the subject has been analyzed using recon all on freesurfer 4.5. I have used similar method for 9 other subjects and there was no error on any of them before. Any idea why am I getting a segmentation error? Thanks, Maryam

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Problems in testing out newly installed Freesurfer with autorecon-1 option
by Susan Kuo 09 Jan '13

09 Jan '13

Hi, I'm currently in the process of verifying that my install of Freesurfer works. I have an Ubuntu 12.04.1 LTS box. I encountered what appeared to be 4 errors after running *recon-all -s bert -autorecon1.* The last line I included here states that the command completed without error, so I'm not sure if I should be concerned that*nu_correct* wasn't found, or that there were loading errors, and a *mincREAD()* error. Could you help me identify what I need to do to correct these issues? I've included the standard output for this command as a text file here. There appear to be 4 issues: ***ISSUE 1: cannot find *nu_correct* ************************* nu_correct: Command not found. INFO: current FREESURFER_HOME does not match that of previous processing. ***ISSUE 2: No such file or directory error******************** cp: cannot stat `./tmp.mri_nu_correct.mni.25253/nu2.mnc': No such file or directory mri_binarize --i ./tmp.mri_nu_correct.mni.25253/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.25253/ones.mgz mincRead(): can't find file ./tmp.mri_nu_correct.mni.25253/nu2.mnc ***ISSUE 3: Loading error****************************** Loading ./tmp.mri_nu_correct.mni.25253/ones.mgz ERROR: loading ./tmp.mri_nu_correct.mni.25253/ones.mgz mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.25253/ones.mgz --i ./tmp.mri_nu_correct.mni.25253/nu2.mnc --sum ./tmp.mri_nu_correct.mni.25253/sum.junk --avgwf ./tmp.mri_nu_correct.mni.25253/output.mean.dat mghRead(./tmp.mri_nu_correct.mni.25253/ones.mgz, -1): could not open file ***ISSUE 4: Loading error****************************** Loading ./tmp.mri_nu_correct.mni.25253/ones.mgz ERROR: loading ./tmp.mri_nu_correct.mni.25253/ones.mgz (standard_in) 1: syntax error mris_calc -o ./tmp.mri_nu_correct.mni.25253/nu2.mnc ./tmp.mri_nu_correct.mni.25253/nu2.mnc mul mincRead(): can't find file ./tmp.mri_nu_correct.mni.25253/nu2.mnc ****This is the last line to standard output, and it seems reassuring********************** recon-all -s bert finished without error at Tue Jan 8 17:49:19 EST 2013 I appreciate whatever help you can give me, and thank you very much for your time! The attached is a text file. Best, S Kuo

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Re: [Freesurfer] longitudinal processing
by Martin Reuter 09 Jan '13

09 Jan '13

Hi Catherine, with edits I think it is best to re-use the 5.0 cross data for the longitudinal processing. Also conceptually there is a difference between longitudinal processing and longitudinal statistical analysis. The image processing will reduce variability of your measures and even if you are interested in cross sectional differences between groups (e.g. thickness differences at baseline), it would be a good idea to run everything through the longitudinal stream. If there is longitudinal image data, I think it will always be advantageous to process it with the longitudinal stream as opposed to the cross sectional. Different scanners are usually not problematic if each subject stays on their scanner and scanners are randomly assigned across groups. If scanners get switched in a longitudinal study, many bad things can happen: - one group switches on average earlier than the other -> bias - only a single or very few time points are on one side of the switch -> cannot model the scanner effect well, as there is no reliable slope on that side of the switch. Anyway it may be a good idea to model the scanner as a covariate and test for a scanner effect. We have seen effects even in software updates on the scanner (e.g. growing brains) and certainly a hardware switch will drastically change the images. Linear mixed effects models are the right mechanism to analyze longitudinal data. Best, Martin On Wed, 2013-01-09 at 19:22 +0000, Catherine Bois wrote: > Thank you for your reply. I am currently trying to decide which method > would be the best to analyze the data we have...We have ca 500 scans > of individuals with differing number of time points for different > individuals and certain clinical measures we wish to relate to > particularly cortical thickness and different cortical regions. > However, the problem is that the scans were not all collected with the > same scanner; would longitudinal still prove to be advantageous over > cross-sectional analysis. As all the manual edits have been conducted > in version 5.0 it would be preferable to keep these and use version > 5.1 for -base -long (unless of course this could be done with better > consistency if using version 5.1?). I was also planning to analyze the > data with linear mixed effect models, does this sound reasonable? > > Thanks very much for your help > > > > > Quoting Martin Reuter <mreuter(a)nmr.mgh.harvard.edu> on Wed, 09 Jan > 2013 13:46:35 -0500: > > > Hi Catherine, > > > > yes, the first step is independent (cross sectional) processing of all > > time points (normal recon-all). > > > > We usually do not recommend to mix versions. But the 5.1 longitudinal > > stream has been designed in a way that it can take the cross sectional > > data from 5.0. So it is possible. Just make sure that if you add time > > points and subjects you still use 5.0 for the cross sectional recons and > > 5.1 for base and long to be consistent. > > > > Alternatively wait a little longer and re-run everything from scratch > > with the new 5.2 version that will come out hopefully this month. > > > > Best, Martin > > > > On Wed, 2013-01-09 at 14:22 +0000, Catherine Bois wrote: > >> Sorry, another question about longitudinal processing; just realized > >> that my institution has been using version 5.0, so all the cross > >> sectional processing has been done with this version, is it ok to go > >> ahead and do base and long with version 5.1 once I have managed to get > >> this installed? > >> > >> Thanks, > >> > >> ----- Forwarded message from C.Bois(a)sms.ed.ac.uk ----- > >> Date: Wed, 09 Jan 2013 13:35:12 +0000 > >> From: Catherine Bois <C.Bois(a)sms.ed.ac.uk> > >> Subject: longitudinal processing > >> To: freesurfer(a)nmr.mgh.harvard.edu > >> > >> Hi, just to clarify, > >> > >> When beginning longitudinal analysis, the first step is the same as > >> cross-sectional processing, eg just the "normal" recon-all command, > >> for each subject, and each individual time point? Then the norm.mgz > >> files are used? > >> > >> Thanks > >> > >> -- > >> The University of Edinburgh is a charitable body, registered in > >> Scotland, with registration number SC005336. > >> > >> > >> > >> ----- End forwarded message ----- > >> > >> > > > > > > > > > > The information in this e-mail is intended only for the person to whom it is > > addressed. If you believe this e-mail was sent to you in error and the e-mail > > contains patient information, please contact the Partners Compliance > > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to > > you in error > > but does not contain patient information, please contact the sender > > and properly > > dispose of the e-mail. > > > > > >

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Freesurfer January 2013