Freesurfer December 2013

freesurfer@nmr.mgh.harvard.edu

107 participants
197 discussions

transfer the Parcellation to MNI
by 宋银南 29 Dec '13

29 Dec '13

Dear all, I want to extract the ROI defined by Desikan-Killiany Atlas and save it as a mask on the MNI space. I try to extract the vertex coordinates by the freesurfer_read_surf and transfer them to MNI. But which surface should I use? And maybe some better method. Thank you for the freesurfer, it is really very good. Best Wishes! Yinnan Song from Peking , China

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EM Registration error
by Mark Plantz 29 Dec '13

29 Dec '13

Hello freesurfers, Does anyone know the physical meaning of the "transform matrix" and the "quasinewton matrix" outputted during "EM Registration" of auto-recon2? For some odd reason, both of them are identity matrices (one's along the diagonal). I am almost certain that should not be the case. Here is some context: ************************************************ Computing MAP estimate using 1658 samples... ************************************************ * dt = 5.00e-06, momentum=0.80, tol=1.00e-05* * l_intensity = 1.0000* * Aligning input volume to GCA...* * Transform matrix 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000;* * nsamples 1658 Quasinewton: input matrix* * 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000;* * THE SEARCH DIRECTION IS NOT A DESCENT DIRECTION IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 0 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 005: -log(p) = -0.0 tol 0.000010* * Resulting transform:* * 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000;* * pass 1, spacing 8: log(p) = -4.8 (old=-5.1)* * transform before final EM align:* * 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000;* Thank you and happy holidays! - Mark

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PhD Positions, Brainnetome Center, CASIA
by Yong Liu 29 Dec '13

29 Dec '13

Dear list, *Job1: PhD Positions are available in Neuroimaging and Brainnetome* Applications close: *Jan. 15, 2014*. *CAS-TWAS President’s Fellowship Programme Download <http://www.brainnetome.org/images/job/PhD_Positions_CASIA.zip>* The role The development of the brain is characterised by the formation of connections between neurons. One of the largest fibre tracts in the brain is the corpus callosum, which connects neurons in the left and right cerebral hemispheres. We are using molecular and genetic approaches as well as state-of-the-art imaging technologies to discover how the brain is wired up during development. This work has direct implications for understanding how the brain functions and the pathophysiological mechanism of psychiatric disorders, by integrating the multi-level network features obtained with various functional and anatomical brain imaging technologies on different scales. Five PhD positions are available at Brainnetome Center of CASIA to utilise neuroimaging technologies to discover mechanisms of brain wiring. These positions will be supported by CAS-TWAS President’s Fellowship Programme for PhD Candidates from Developing Countries and other grants. They involve developing neuroimage analysis methods and tools and applying them to neuroscience and clinical problems. In this role the students will develop skills in developing computational algorithms and computer programming in neuroimage analysis that could be utilised in both basic research and clinical areas. The person Applicants should meet the requirements of “CAS-TWAS President’s Fellowship Programme for PhD Candidates from Developing Countries” and have MSc degree in one of the following fields: mathematics, physics, neuroimaging, computer science, electronic engineering, neurobiology, psychology, cognitive neuroscience, psychiatry, and neurology. Outstanding C/C++ programming skills in Linux are highly desired. Enquiries Please contact Professor Tianzi Jiang at jiangtz(a)nlpr.ia.ac.cn. In order to complete the form application process, please fill in the - Fellowship form<http://www.brainnetome.org/images/job/PhD_Positions_CASIA.zip> Applications close: *Jan. 15, 2014*. Please visit our homepages www.brainnetome.org Sincerely, Yong -- Best wishes. -------------------------------------------------------------------- Liu Yong Brainnetome Center National Laboratory of Pattern Recognition (NLPR) Institute of Automation, Chinese Academy of Sciences (CASIA) http://www.brainnetome.org/yongliu

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import from caret
by Colin Reveley 28 Dec '13

28 Dec '13

Hi - I actually sent this a couple of weeks back, but only just noticed it was bounced back because I used the wrong address. Happy new year! Date: Sat, 14 Dec 2013 09:57:27 +0000 Subject: import from CARET Hi - If one has a surface that is aligned to a volume in CARET, is it possible (or rather, is there a general procedure) to export the volume and the surface into freesurfer? The volume in CARET won't be conformed. It's header will define the origin such that CARET interprets a specific voxel/coordinate as the anterior commisure. The surface will be aligned to the volume in the sense that it's co-ordinates work with respect to that header/origin. What I need to do is run mri_convert -c to conform the volume, and then convert the surface to freesurfer format in such a way that it's now aligned to the conformed volume in freesurfer. Then I'd do some stuff (refine the surface) in freesurfer, and export the surface back to CARET. That's the general issue. Details include: the surface will need to be transformed so that it appears to freesurfer to be 1mm data, and the volume will have it's header changed so that it claims 1mm voxels (the data is higher resolution than 1mm). that should be fine. Also, there will be no ?h.orig surface, and the mesh is arbitrary wrt the MRI data (not derived from it in any way). I don't know if that matters. The problem can be considered as finding the inverse of Van Essen's Freesurfer to F99 pipeline. Pretty much. It's some scaling, translating, conforming and format conversions. connectome workbench, FS, CARET, FSL, MATLAB whatever are all relevant/involved tools hope can help Colin Reveley

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FW: FreeSurfer Installation
by Tyler Farren 27 Dec '13

27 Dec '13

Hello, my name is Tyler Farren and I am from the Carnegie Mellon University Psychology Department. I recently installed FreeSurfer on a cluster and it seemed to install properly. However, when I attempt to go through the steps on the testing page, nothing seems to work. I am running CentOS 6.2. I get the following errors: $ freeview -v $SUBJECTS_DIR/bert/mri/norm.mgz -v $SUBJECTS_DIR/bert/mri/aseg.mgz:colormap=lut:opacity=0.2 -f $SUBJECTS_DIR/bert/surf/lh.white:edgecolor=yellow -f $SUBJECTS_DIR/bert/surf/rh.white:edgecolor=yellow -f $SUBJECTS_DIR/bert/surf/lh.pial:annot=aparc:edgecolor=red -f $SUBJECTS_DIR/bert/surf/rh.pial:annot=aparc:edgecolor=red X Error: BadValue (integer parameter out of range for operation) 2 Extension: 147 (Uknown extension) Minor opcode: 3 (Unknown request) Resource id: 0x40 Abort $ tkmedit bert orig.mgz GLUT: Fatal Error in tkmedit.bin: visual with necessary capabilities not found. $ tkmedit bert norm.mgz -segmentation aseg.mgz $FREESURFER_HOME/FreeSurferColorLUT.txt GLUT: Fatal Error in tkmedit.bin: visual with necessary capabilities not found. [tfarren@psych-o freesurfer]$ tkmedit bert mri/orig.mgz GLUT: Fatal Error in tkmedit.bin: visual with necessary capabilities not found. $ tksurfer bert rh pial subject is bert hemi is rh surface is pial surfer: current subjects dir: /home/cresdata/freesurfer/subjects surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to: surfer: /home/cresdata/freesurfer checking for nofix files in 'pial' Reading image info (/home/cresdata/freesurfer/subjects/bert) Reading /home/cresdata/freesurfer/subjects/bert/mri/orig.mgz surfer: Reading header info from /home/cresdata/freesurfer/subjects/bert/mri/orig.mgz surfer: vertices=133299, faces=266594 surfer: single buffered window surfer: tkoInitWindow(bert) Window type not found! surfer: failed, trying double buffered window Window type not found! surfer: failed, no suitable display found $ qdec ERROR: In /usr/pubsw/packages/vtk/5.6.0/src/Rendering/vtkXOpenGLRenderWindow.cxx, line 405 vtkXOpenGLRenderWindow (0x273e9900): Could not find a decent visual ERROR: In /usr/pubsw/packages/vtk/5.6.0/src/Rendering/vtkXOpenGLRenderWindow.cxx, line 405 vtkXOpenGLRenderWindow (0x273e9900): Could not find a decent visual ERROR: In /usr/pubsw/packages/vtk/5.6.0/src/Rendering/vtkXOpenGLRenderWindow.cxx, line 405 vtkXOpenGLRenderWindow (0x273e9900): Could not find a decent visual X Error of failed request: BadValue (integer parameter out of range for operation) Major opcode of failed request: 147 (GLX) Minor opcode of failed request: 3 (X_GLXCreateContext) Value in failed request: 0x40 Serial number of failed request: 4812 Current serial number in output stream: 4812 Please let me know if you can help with this. Thanks! Tyler Farren

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Re: [Freesurfer] reconall error
by Bruce Fischl 27 Dec '13

27 Dec '13

Hi Rashmi can you try 5.3 and see if it works? Alternatively you can email me the orig.mgz and I can try it Bruce On Wed, 30 Oct 2013, Rashmi Singh wrote: > Hey Bruce, > I ran FreeSurfer recon -all (with flags -use-mritotal and -notal-check > flags) with a data set that failed showing the same error that I had > received earlier. > I am sure have the correct data set. > I am attaching the recon-all.log and the data. > We have FreeSurfer Version 5.1.0 > Please advice. > Thanks, > Rashmi > > On 10/23/13 9:06 AM, "Bruce Fischl" <fischl(a)nmr.mgh.harvard.edu> wrote: > >> Hi Rashmi >> >> what version are you running? If 5.3, upload the subject and I'll take a >> look >> Bruce >> On Tue, 22 Oct 2013, Rashmi Singh wrote: >> >>> Hello FreeSurfer experts, >>> I am trying to run recon all on my data set, but I got following error >>> message. >>> Please help me understand the message and suggest solution. >>> Thanks, >>> Rashmi >>> >>> #@# Skull Stripping Tue Oct 22 13:57:00 CDT 2013 >>> >>> /home/rsingh/storage/labs/pbellgowan/MTBI/RASHMIANALYSIS/ANAL2013/CombT1T >>> 2Practice/FreeSurfer/AA470-2prac/ >>> mri >>> >>> mri_em_register -skull nu.mgz >>> /opt/freesurfer/average/RB_all_withskull_2008-03-26.gca >>> transforms/talairach_with_skull.lta >>> >>> aligning to atlas containing skull, setting unknown_nbr_spacing = 5 >>> reading 1 input volumes... >>> logging results to talairach_with_skull.log >>> reading '/opt/freesurfer/average/RB_all_withskull_2008-03-26.gca'... >>> gcaAllocMax: node dims 64 64 64 >>> gcaAllocMax: prior dims 128 128 128 >>> gcaAllocMax: max_labels 0 >>> average std = 23.1 using min determinant for regularization = 53.4 >>> 0 singular and 5702 ill-conditioned covariance matrices regularized >>> reading 'nu.mgz'... >>> freeing gibbs priors...done. >>> bounding unknown intensity as < 20.2 or > 943.7 >>> total sample mean = 92.0 (1443 zeros) >>> ************************************************ >>> spacing=8, using 3481 sample points, tol=1.00e-05... >>> ************************************************ >>> register_mri: find_optimal_transform >>> find_optimal_transform: nsamples 3481, passno 0, spacing 8 >>> GCAhistoScaleImageIntensities: could not find wm peak >>> resetting wm mean[0]: 117 --> 126 >>> resetting gm mean[0]: 74 --> 74 >>> input volume #1 is the most T1-like >>> using real data threshold=6.0 >>> skull bounding box = (130, 148, 130) --> (130, 148, 130) >>> using (130, 148, 130) as brain centroid... >>> mean wm in atlas = 126, using box (130,148,130) --> (129, 147,129) to >>> find MRI wm >>> WARNING: gca.c::GCAhistoScaleImageIntensities: h_mri->nbins=255, >>> mri_peak=-1 >>> before smoothing, mri peak at 0 >>> WARNING2: gca.c::GCAhistoScaleImageIntensities: h_mri->nbins=255, >>> mri_peak=-1 >>> after smoothing, mri peak at 0, scaling input intensities by inf >>> Linux enders 2.6.32-52-server #114-Ubuntu SMP Wed Sep 11 19:06:34 UTC >>> 2013 x86_64 GNU/Linux >>> >>> recon-all -s AA470-2prac exited with ERRORS at Tue Oct 22 13:57:26 CDT >>> 2013 >>> >>> To report a problem, see >>> http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> >>> >>> >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. > >

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R: Re: R: Re: Tracula -stat
by stdp82＠virgilio.it 27 Dec '13

27 Dec '13

My error. I thought that I should run this command for each subject. Stefano ----Messaggio originale---- Da: ayendiki(a)nmr.mgh.harvard.edu Data: 27-dic-2013 16.51 A: <stdp82(a)virgilio.it> Cc: <freesurfer(a)nmr.mgh.harvard.edu> Ogg: Re: R: Re: [Freesurfer] Tracula -stat Are you running this with only one subject? What are you trying to do? The purpose of this step is to combine measures from multiple subjects. On Fri, 27 Dec 2013, stdp82(a)virgilio.it wrote: > I'm sorry and I'm attaching the files.Thanks, > > Stefano > > > trac-all -stat -c $FREESURFER_HOME/Control01 > INFO: SUBJECTS_DIR is /Applications/freesurfer/subjects/subject_prova > INFO: Diffusion root is /Applications/freesurfer/subjects/subject_prova > Actual FREESURFER_HOME /Applications/freesurfer > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.cst_AS_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.6465 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.FA_Avg.txt > Done in 0.799 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.cst_AS_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.63906 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.FA_Avg.txt > Done in 0.317 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.ilf_AS_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.21324 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.FA_Avg.txt > Done in 0.307 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.ilf_AS_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.10424 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.FA_Avg.txt > Done in 0.269 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.unc_AS_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.58957 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.FA_Avg.txt > Done in 1.128 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.unc_AS_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.21483 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.FA_Avg.txt > Done in 0.36 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/fmajor_PP_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.32681 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.32 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/fminor_PP_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.13356 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.273 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.atr_PP_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.25399 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.3 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.atr_PP_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.18351 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.298 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.cab_PP_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.62361 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.293 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.cab_PP_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.32551 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.27 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.ccg_PP_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.30666 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.273 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.ccg_PP_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.31858 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.28 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.slfp_PP_avg33_mni_flt/pathstat > s.byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.11608 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.312 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.slfp_PP_avg33_mni_flt/pathstat > s.byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.3463 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.274 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.slft_PP_avg33_mni_flt/pathstat > s.byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.15215 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.306 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.slft_PP_avg33_mni_flt/pathstat > s.byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.3093 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.31 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.cst_AS_avg33_mni_bbr/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.bbr.mat > INFO: Sampling interval along path is 2.49298 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.FA_Avg.txt > Done in 0.376 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.cst_AS_avg33_mni_bbr/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.bbr.mat > Segmentation fault > > > > > ----Messaggio originale---- > Da: ayendiki(a)nmr.mgh.harvard.edu > Data: 27-dic-2013 13.50 > A: <stdp82(a)virgilio.it> > Cc: <freesurfer(a)nmr.mgh.harvard.edu> > Ogg: Re: [Freesurfer] Tracula -stat > > Hi Stefano - As always, it'll be impossible to guess what's causing the > error without seeing at least the log from the command and the > configuration file. > > a.y > > > Hi list, > > > > I'm performing -stat step but this command produces sementation fault > > after loading affine registration .mat. > > Thanks, > > > > Stefan > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer(a)nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and properly > dispose of the e-mail. > > > > >

1 0

R: Re: Tracula -stat
by stdp82＠virgilio.it 27 Dec '13

27 Dec '13

I'm sorry and I'm attaching the files.Thanks, Stefano trac-all -stat -c $FREESURFER_HOME/Control01 INFO: SUBJECTS_DIR is /Applications/freesurfer/subjects/subject_provaINFO: Diffusion root is /Applications/freesurfer/subjects/subject_provaActual FREESURFER_HOME /Applications/freesurfer/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.cst_AS_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.6465 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.FA_Avg.txtDone in 0.799 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.cst_AS_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.63906 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.FA_Avg.txtDone in 0.317 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.ilf_AS_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.21324 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.FA_Avg.txtDone in 0.307 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.ilf_AS_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.10424 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.FA_Avg.txtDone in 0.269 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.unc_AS_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.58957 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.FA_Avg.txtDone in 1.128 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.unc_AS_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.21483 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.FA_Avg.txtDone in 0.36 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/fmajor_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.32681 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.FA_Avg.txtDone in 0.32 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/fminor_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.13356 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.FA_Avg.txtDone in 0.273 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.atr_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.25399 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.FA_Avg.txtDone in 0.3 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.atr_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.18351 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.FA_Avg.txtDone in 0.298 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.cab_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.62361 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.FA_Avg.txtDone in 0.293 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.cab_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.32551 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.FA_Avg.txtDone in 0.27 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.ccg_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.30666 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.FA_Avg.txtDone in 0.273 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.ccg_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.31858 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.FA_Avg.txtDone in 0.28 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.slfp_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.11608 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.FA_Avg.txtDone in 0.312 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.slfp_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.3463 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.FA_Avg.txtDone in 0.274 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.slft_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.15215 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.FA_Avg.txtDone in 0.306 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.slft_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.3093 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.FA_Avg.txtDone in 0.31 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbrText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.bbr.matINFO: Sampling interval along path is 2.49298 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.FA_Avg.txtDone in 0.376 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbrText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.bbr.matSegmentation fault ----Messaggio originale---- Da: ayendiki(a)nmr.mgh.harvard.edu Data: 27-dic-2013 13.50 A: <stdp82(a)virgilio.it> Cc: <freesurfer(a)nmr.mgh.harvard.edu> Ogg: Re: [Freesurfer] Tracula -stat Hi Stefano - As always, it'll be impossible to guess what's causing the error without seeing at least the log from the command and the configuration file. a.y > Hi list, > > I'm performing -stat step but this command produces sementation fault > after loading affine registration .mat. > Thanks, > > Stefan > _______________________________________________ > Freesurfer mailing list > Freesurfer(a)nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

2 1

Tracula -stat
by stdp82＠virgilio.it 27 Dec '13

27 Dec '13

Hi list, I'm performing -stat step but this command produces sementation fault after loading affine registration .mat. Thanks, Stefan

2 1

appropriate graphic card in freeview and tksurfer
by charujing123 27 Dec '13

27 Dec '13

Hi Gari and others, When I ran freeview -f $SUBJECTS_DIR/fsaverage/surf/lh.inflated:overlay=lh.gender_age.glmdir/lh-Avg-thickness-age-Cor/mc-z.negative.sig.cluster.mgh:overlay_threshold=2,5:annot=lh.gender_age.glmdir/lh-Avg-thickness-age-Cor/mc-z.negative.sig.ocn.annot in Windows server VM workstation, I couldnot configure the overlay as it is blocked there and without any response. If I want to install a different one, which brand and version should I buy? Thanks. All the best. 2013-12-27 charujing123

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Freesurfer December 2013