Freesurfer October 2017

freesurfer@nmr.mgh.harvard.edu

119 participants
179 discussions

Test-retest reliability in longitudinal data
by Worker, Amanda 04 Oct '17

04 Oct '17

Hi all, I have a longitudinal dataset that I'd like to calculate test-retest reliability for. However, I am not sure whether to calculate this for the cross-sectionally processed data or longitudinal data? It would seem to make sense to use the cross-sectional data, as the time points are independent, but then it means that the test-retest results would not be applicable in a dataset processed longitudinally. On the other hand, calculating reliability metrics for data processed in the exact same way as will be used in further studies seems to make sense also, but would calculating test-retest on the longitudinally processed data bias the results, as the data points are not fully independent? Does anyone have any idea of the best way forward? Thanks, A

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Cortical parcellation
by Fereshte 04 Oct '17

04 Oct '17

Dear Experts, How to figure out if a cortical parcellation is Considered as a part of gray matter or white matter ? Thank you!

3 4

Brodmann areas - exvivo labels
by Trisanna Sprung-Much 03 Oct '17

03 Oct '17

Hi there If I wanted to compare some spatial probability maps of some sulci of interest with the Juelich Data provided by FreeSurfer, would it make more sense to use the unthresholded Brodmann areas or the .thresh ones? Based on my understanding of how the .thresh was created (by creating a surface area of the average BA label that best resembled the average surface area of the label from each individual hemisphere) in order to avoid including vertices that had a probability of 10%, for instance, I think using .thresh would be fine. However, I thought I would verify. In input would be greatly appreciated. Best Trisanna -- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

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New Post-doc and Research Associate positions on the MIDUS study at The Center for Healthy Minds
by STACEY M SCHAEFER 03 Oct '17

03 Oct '17

Postdoctoral Fellow in Affective, Cognitive, and Aging Neuroscience Degree and area of specialization: Ph.D. in Neuroscience or Psychology Experience in neuroimaging research in emotion, cognition, and/or aging preferred. Minimum number of years and type of relevant work experience: * Demonstrated experience in neuroimaging. * Experience with multi-modal imaging including functional, resting state, diffusion weighted, and structural preferred. * Statistical acumen in analyzing neuroimaging data and programming expertise. * Demonstrated experience in scientific communication including speaking and publishing. * Excellent organizational, project management, interpersonal, writing and communication skills. * Adaptable; self-motivated. * Team player who possesses a passion for CHM mission/core values. Preferred: * Some prior post-doctoral experience. * Experience with psychophysiological data including heart rate variability, skin conductance, pupilometry, and/or eye tracking. Principal duties: The Center for Healthy Minds (CHM) was founded and is led by neuroscientist Richard J. Davidson. CHM’s mission is to cultivate well-being and relieve suffering through a scientific understanding of the mind. CHM is a leader in rigorous, interdisciplinary basic and translational research aimed at understanding the mind and how to nurture well-being in ourselves and others. CHM communicates these findings to the world, inspires scientists to conduct further research, and influences a shift in culture to embrace well-being. The successful candidate will play a key role analyzing both extant and new neuroimaging data in relation to sociodemographic, behavioral, cognitive, and biomarker data from the Midlife in the US (MIDUS; http://midus.wisc.edu/) national longitudinal study. MIDUS - Midlife in the United States, A National ...<http://midus.wisc.edu/> midus.wisc.edu A National Study of Health and Well-Being Additional information: Expected position duration is two years with potential for renewal based on funding and performance. UW-Madison is an equal opportunity/affirmative action employer. We promote excellence through diversity and encourage all qualified individuals to apply. To apply please send cover letter and CV to: Mike Kelly, mkelly1(a)wisc.edu<mailto:mkelly1@wisc.edu>, (608) 890-1115 ---------------------------------------------------------------------------------------------------------------------------------------------------- The Center for Healthy Minds, at the University of Wisconsin-Madison, is also recruiting for a Research Specialist! The successful candidate will be responsible for scientific integrity of data collection, data processing, and participant screening and scheduling for the longitudinal Midlife in the United States (MIDUS) study and a comparative study collecting similar measures in a cohort from the Wisconsin Registry for Alzheimer's Prevention (WRAP). MIDUS is a national longitudinal study of health and well-being. The primary purpose of this component of the MIDUS study is to examine how individual differences in the neural bases of different emotional response styles relate to health and well-being throughout the lifespan. The main goal of the study in the WRAP sample is to understand how different emotional response styles may increase a person's risk of developing Alzheimer's disease. Minimum $31,113 ANNUAL (12 months) depending on qualifications. Learn more and apply<http://jobs.hr.wisc.edu/cw/en-us/job/496193/research-specialist>.<http://jobs.hr.wisc.edu/cw/en-us/job/496193/research-specialist> UW-Madison is an affirmative action/equal employment employer and we encourage women, minorities, veterans, and people with disabilities to apply. Application deadline is 11:55pm October 11, 2017. Stacey M. Schaefer, Ph.D. Center for Healthy Minds University of Wisconsin-Madison 625 W Washington Ave Madison WI 53703 608-263-9321

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convert asc to fsaverage
by Alexandra Apple 03 Oct '17

03 Oct '17

Hi, I was wondering if there is a way to convert an asc file to fsaverage. I have a list of vertex values and I want to convert them to a thickness format. I know how to use mri_convert to go form thickness to ascii and I was hoping there is a way to go in the other direction. Thanks! Ali

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R: Re: R: Re: R: Re: R: Re: Map of covariance
by stdp82＠virgilio.it 03 Oct '17

03 Oct '17

Thank you very much. Where I should put 0 0 0 0 .25 .25 .25 .25? Which are the contrast reported below that I should modify? C1) gr1-gr2_intercept 1 -1 0 0 0 0 0 0 C2 )gr1-gr2_slope 0 0 0 0 1 -1 0 0 C3) gr1-gr3_intercept 1 0 -1 0 0 0 0 0 C4) gr1-gr3_slope 0 0 0 0 1 0 -1 0 C5) gr1-gr4_intercept 1 0 0 -1 0 0 0 0 C6) gr1-gr4_slope 0 0 0 0 1 0 0 -1 C7) gr2-gr3_intercept 0 1 -1 0 0 0 0 0 C8) gr2-gr3_slope 0 0 0 0 0 1 -1 0 C9) gr2-gr4_intercept 0 1 0 -1 0 0 0 0 C10) gr2-gr4_slope 0 0 0 0 0 1 0 -1 C11) gr3-gr4_intercept 0 0 1 -1 0 0 0 0 C12) gr3-gr4_slope 0 0 0 0 0 0 1 -1 C13) gr1+gr2-vs-gr3+gr4.intercept 0.5 0.5 -0.5 -0.5 0 0 0 0 C14) gr1+gr2-vs-gr3+gr4.slope 0 0 0 0 0.5 0.5 -0.5 -0.5 C15) group.effect.intercept 1 -1 0 0 0 0 0 0 1 0 -1 0 0 0 0 0 1 0 0 -1 0 0 0 0 C16) group.effect.slope 0 0 0 0 1 -1 0 0 0 0 0 0 1 0 -1 0 0 0 0 0 1 0 0 -1 Stefano >----Messaggio originale---- >Da: "Douglas Greve" <greve(a)nmr.mgh.harvard.edu> >Data: 3-ott-2017 16.19 >A: <freesurfer(a)nmr.mgh.harvard.edu> >Ogg: Re: [Freesurfer] R: Re: R: Re: R: Re: Map of covariance > >probably you want 0 0 0 0 .25 .25 .25 .25 > > > >On 10/3/17 10:10 AM, stdp82(a)virgilio.it wrote: >> Many thank for your response. >> Claryfing my question on point 3, >> When I look in group.effect.slope, the map show the group difference removing >> the effect of the covariate. >> Conversely, I would to obtain the map reporting only the effect of covariate >> on dependent variable (functional connectivity). >> Is possible to look on it? >> Regards >> Stefano >> >> >>> ----Messaggio originale---- >>> Da: "Douglas N Greve" <greve(a)nmr.mgh.harvard.edu> >>> Data: 2-ott-2017 16.58 >>> A: <freesurfer(a)nmr.mgh.harvard.edu> >>> Ogg: Re: [Freesurfer] R: Re: R: Re: Map of covariance >>> >>> >>> >>> On 10/01/2017 05:08 PM, stdp82(a)virgilio.it wrote: >>>> Hi, >>>> on 4 groups, 1 covariate (4GV1) >>>> >>>> I run mri_glmfit using the following .mtx >>>> >>>> C1) gr1-gr2_intercept 1 -1 0 0 0 0 0 0 >>>> C2 )gr1-gr2_slope 0 0 0 0 1 -1 0 0 >>>> C3) gr1-gr3_intercept 1 0 -1 0 0 0 0 0 >>>> C4) gr1-gr3_slope 0 0 0 0 1 0 -1 0 >>>> C5) gr1-gr4_intercept 1 0 0 -1 0 0 0 0 >>>> C6) gr1-gr4_slope 0 0 0 0 1 0 -1 0 >>> should be >>> >>> 0 0 0 0 1 0 0 -1 >>> >>>> C7) gr2-gr3_intercept 0 1 -1 0 0 0 0 0 >>>> C8) gr2-gr3_slope 0 0 0 0 0 1 -1 0 >>>> C9) gr2-gr4_intercept 0 1 0 -1 0 0 0 0 >>>> C10) gr2-gr4_slope 0 0 0 0 0 1 0 -1 >>>> C11) gr3-gr4_intercept 0 0 1 -1 0 0 0 0 >>>> C12) gr3-gr4_slope 0 0 0 0 0 0 1 -1 >>>> C13) gr1+gr2-vs-gr3+gr4.intercept 0.5 0.5 -0.5 -0.5 0 0 0 0 >>>> C14) gr1+gr2-vs-gr3+gr4.slope 0 0 0 0 0.5 0.5 -0.5 -0.5 >>>> C15) group.effect.intercept >>>> 1 -1 0 0 0 0 0 0 >>>> 1 0 -1 0 0 0 0 0 >>>> 1 0 0 -1 0 0 0 0 >>>> C16) group.effect.slope >>>> 0 0 0 0 1 -1 0 0 >>>> 0 0 0 0 1 0 -1 0 >>>> 0 0 0 0 1 0 0 -1 >>>> >>>> Please: >>>> 1) Could you check whether the all .mtx are complete and corrected, in >>>> particular the gr1+gr2-vs-gr3+gr4.intercept and the gr1+gr2-vs-gr3+gr4. >> slope? >>> they look correct, except for the one i noted >>>> 2) Could you explain the meaning of: >>>> gr1+gr2-vs-gr3+gr4.slope - does the average slope of grp1 and grp2 differ >> from that of grp3 and 4 >>>> gr1+gr2-vs-gr3+gr4.intercept - same >>>> group.effect.slope - interaction between group and covariate >>>> group.effect.intercept - is there an effect of group on the inercept >>>> 3) Which is the contrast identifying the effect of covariate on group >>>> differences? >>> not sure what you mean >>>> Thanks >>>> >>>> Best regards >>>> >>>> >>>> Stefano >>>> >>>> >>>> >>>>> ----Messaggio originale---- >>>>> Da: "Douglas N Greve" <greve(a)nmr.mgh.harvard.edu> >>>>> Data: 5-set-2017 22.59 >>>>> A: <freesurfer(a)nmr.mgh.harvard.edu> >>>>> Ogg: Re: [Freesurfer] R: Re: Map of covariance >>>>> >>>>> you would need to create a contrast to look for the interaction. If you >>>>> have four gruops and 1 covariate, then it would be >>>>> >>>>> 0 0 0 0 1 -1 0 0 >>>>> >>>>> 0 0 0 0 1 0 -1 0 >>>>> >>>>> 0 0 0 0 1 0 0 -1 >>>>> >>>>> >>>>> >>>>> On 09/05/2017 04:32 PM, stdp82(a)virgilio.it wrote: >>>>>> Hi, >>>>>> e.g., by considering two or more groups, I would like to map the clusters >>>>>> reporting the covariance between the functional connectivity or cortical >>>>>> thickness (dependent variable) and age, tacking in account the group >>>>>> differences. >>>>>> Instead, I'm not interested to map the group differences, taking in >> account >>>>>> the nuisance factors. >>>>>> Thanks, >>>>>> Stefano >>>>>> >>>>>>> ----Messaggio originale---- >>>>>>> Da: "Douglas N Greve" <greve(a)nmr.mgh.harvard.edu> >>>>>>> Data: 5-set-2017 18.12 >>>>>>> A: <freesurfer(a)nmr.mgh.harvard.edu> >>>>>>> Ogg: Re: [Freesurfer] Map of covariance >>>>>>> >>>>>>> I don't understand what you are asking. can you elaborate? >>>>>>> >>>>>>> >>>>>>> On 08/30/2017 12:50 PM, stdp82(a)virgilio.it wrote: >>>>>>>> Hi list, >>>>>>>> by applying a design e.g. 4GV1 in fsgd I could assess the dependence >>>>>>>> of group differences taking in account the effect of covariate. >>>>>>>> Anyway, where I should look if I want assess the the map showing the >>>>>>>> clusters in which the dependent variable is associated to covariate, >>>>>>>> tacking in account the group difference? Please could you suggest my >>>>>>>> the path? >>>>>>>> Thanks >>>>>>>> >>>>>>>> Stefano >>>>>>>> >>>>>>>> >>>>>>>> _______________________________________________ >>>>>>>> Freesurfer mailing list >>>>>>>> Freesurfer(a)nmr.mgh.harvard.edu >>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>> -- >>>>>>> Douglas N. Greve, Ph.D. >>>>>>> MGH-NMR Center >>>>>>> greve(a)nmr.mgh.harvard.edu >>>>>>> Phone Number: 617-724-2358 >>>>>>> Fax: 617-726-7422 >>>>>>> >>>>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>> Outgoing: ftp://surfer.nmr.mgh.harvard. edu/transfer/outgoing/flat/greve/ >>>>>>> >>>>>>> _______________________________________________ >>>>>>> Freesurfer mailing list >>>>>>> Freesurfer(a)nmr.mgh.harvard.edu >>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>> >>>>>>> >>>>>>> The information in this e-mail is intended only for the person to whom >> it >>>> is >>>>>>> addressed. If you believe this e-mail was sent to you in error and the >> e- >>>> mail >>>>>>> contains patient information, please contact the Partners Compliance >>>> HelpLine >>>>>> at >>>>>>> http://www.partners.org/complianceline . If the e-mail was sent to you >> in >>>>>> error >>>>>>> but does not contain patient information, please contact the sender and >>>>>> properly >>>>>>> dispose of the e-mail. >>>>>>> >>>>>>> >>>>>> _______________________________________________ >>>>>> Freesurfer mailing list >>>>>> Freesurfer(a)nmr.mgh.harvard.edu >>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>> >>>>>> >>>>> -- >>>>> Douglas N. Greve, Ph.D. >>>>> MGH-NMR Center >>>>> greve(a)nmr.mgh.harvard.edu >>>>> Phone Number: 617-724-2358 >>>>> Fax: 617-726-7422 >>>>> >>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer(a)nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer(a)nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> greve(a)nmr.mgh.harvard.edu >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer(a)nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer(a)nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > >_______________________________________________ >Freesurfer mailing list >Freesurfer(a)nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >

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R: Re: R: Re: R: Re: Map of covariance
by stdp82＠virgilio.it 03 Oct '17

03 Oct '17

Many thank for your response. Claryfing my question on point 3, When I look in group.effect.slope, the map show the group difference removing the effect of the covariate. Conversely, I would to obtain the map reporting only the effect of covariate on dependent variable (functional connectivity). Is possible to look on it? Regards Stefano >----Messaggio originale---- >Da: "Douglas N Greve" <greve(a)nmr.mgh.harvard.edu> >Data: 2-ott-2017 16.58 >A: <freesurfer(a)nmr.mgh.harvard.edu> >Ogg: Re: [Freesurfer] R: Re: R: Re: Map of covariance > > > >On 10/01/2017 05:08 PM, stdp82(a)virgilio.it wrote: >> Hi, >> on 4 groups, 1 covariate (4GV1) >> >> I run mri_glmfit using the following .mtx >> >> C1) gr1-gr2_intercept 1 -1 0 0 0 0 0 0 >> C2 )gr1-gr2_slope 0 0 0 0 1 -1 0 0 >> C3) gr1-gr3_intercept 1 0 -1 0 0 0 0 0 >> C4) gr1-gr3_slope 0 0 0 0 1 0 -1 0 >> C5) gr1-gr4_intercept 1 0 0 -1 0 0 0 0 >> C6) gr1-gr4_slope 0 0 0 0 1 0 -1 0 >should be > >0 0 0 0 1 0 0 -1 > >> C7) gr2-gr3_intercept 0 1 -1 0 0 0 0 0 >> C8) gr2-gr3_slope 0 0 0 0 0 1 -1 0 >> C9) gr2-gr4_intercept 0 1 0 -1 0 0 0 0 >> C10) gr2-gr4_slope 0 0 0 0 0 1 0 -1 >> C11) gr3-gr4_intercept 0 0 1 -1 0 0 0 0 >> C12) gr3-gr4_slope 0 0 0 0 0 0 1 -1 >> C13) gr1+gr2-vs-gr3+gr4.intercept 0.5 0.5 -0.5 -0.5 0 0 0 0 >> C14) gr1+gr2-vs-gr3+gr4.slope 0 0 0 0 0.5 0.5 -0.5 -0.5 >> C15) group.effect.intercept >> 1 -1 0 0 0 0 0 0 >> 1 0 -1 0 0 0 0 0 >> 1 0 0 -1 0 0 0 0 >> C16) group.effect.slope >> 0 0 0 0 1 -1 0 0 >> 0 0 0 0 1 0 -1 0 >> 0 0 0 0 1 0 0 -1 >> >> Please: >> 1) Could you check whether the all .mtx are complete and corrected, in >> particular the gr1+gr2-vs-gr3+gr4.intercept and the gr1+gr2-vs-gr3+gr4. slope? >they look correct, except for the one i noted >> 2) Could you explain the meaning of: >> gr1+gr2-vs-gr3+gr4.slope - does the average slope of grp1 and grp2 differ from that of grp3 and 4 >> gr1+gr2-vs-gr3+gr4.intercept - same >> group.effect.slope - interaction between group and covariate >> group.effect.intercept - is there an effect of group on the inercept >> 3) Which is the contrast identifying the effect of covariate on group >> differences? >not sure what you mean >> >> Thanks >> >> Best regards >> >> >> Stefano >> >> >> >>> ----Messaggio originale---- >>> Da: "Douglas N Greve" <greve(a)nmr.mgh.harvard.edu> >>> Data: 5-set-2017 22.59 >>> A: <freesurfer(a)nmr.mgh.harvard.edu> >>> Ogg: Re: [Freesurfer] R: Re: Map of covariance >>> >>> you would need to create a contrast to look for the interaction. If you >>> have four gruops and 1 covariate, then it would be >>> >>> 0 0 0 0 1 -1 0 0 >>> >>> 0 0 0 0 1 0 -1 0 >>> >>> 0 0 0 0 1 0 0 -1 >>> >>> >>> >>> On 09/05/2017 04:32 PM, stdp82(a)virgilio.it wrote: >>>> Hi, >>>> e.g., by considering two or more groups, I would like to map the clusters >>>> reporting the covariance between the functional connectivity or cortical >>>> thickness (dependent variable) and age, tacking in account the group >>>> differences. >>>> Instead, I'm not interested to map the group differences, taking in account >>>> the nuisance factors. >>>> Thanks, >>>> Stefano >>>> >>>>> ----Messaggio originale---- >>>>> Da: "Douglas N Greve" <greve(a)nmr.mgh.harvard.edu> >>>>> Data: 5-set-2017 18.12 >>>>> A: <freesurfer(a)nmr.mgh.harvard.edu> >>>>> Ogg: Re: [Freesurfer] Map of covariance >>>>> >>>>> I don't understand what you are asking. can you elaborate? >>>>> >>>>> >>>>> On 08/30/2017 12:50 PM, stdp82(a)virgilio.it wrote: >>>>>> Hi list, >>>>>> by applying a design e.g. 4GV1 in fsgd I could assess the dependence >>>>>> of group differences taking in account the effect of covariate. >>>>>> Anyway, where I should look if I want assess the the map showing the >>>>>> clusters in which the dependent variable is associated to covariate, >>>>>> tacking in account the group difference? Please could you suggest my >>>>>> the path? >>>>>> Thanks >>>>>> >>>>>> Stefano >>>>>> >>>>>> >>>>>> _______________________________________________ >>>>>> Freesurfer mailing list >>>>>> Freesurfer(a)nmr.mgh.harvard.edu >>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> -- >>>>> Douglas N. Greve, Ph.D. >>>>> MGH-NMR Center >>>>> greve(a)nmr.mgh.harvard.edu >>>>> Phone Number: 617-724-2358 >>>>> Fax: 617-726-7422 >>>>> >>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer(a)nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> >>>>> >>>>> The information in this e-mail is intended only for the person to whom it >> is >>>>> addressed. If you believe this e-mail was sent to you in error and the e- >> mail >>>>> contains patient information, please contact the Partners Compliance >> HelpLine >>>> at >>>>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>>> error >>>>> but does not contain patient information, please contact the sender and >>>> properly >>>>> dispose of the e-mail. >>>>> >>>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer(a)nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> greve(a)nmr.mgh.harvard.edu >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer(a)nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer(a)nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > >-- >Douglas N. Greve, Ph.D. >MGH-NMR Center >greve(a)nmr.mgh.harvard.edu >Phone Number: 617-724-2358 >Fax: 617-726-7422 > >Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >www.nmr.mgh.harvard.edu/facility/filedrop/index.html >Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > >_______________________________________________ >Freesurfer mailing list >Freesurfer(a)nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >

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how to separate any sub cortical region in freesurfer ?
by Vidhu Agrawal 03 Oct '17

03 Oct '17

how to separate any sub cortical region in freesurfer ?

4 7

ExploreDTI Workshop in March 2018
by Szabolcs David 03 Oct '17

03 Oct '17

ExploreDTI Workshop - A course on processing, analyzing, and visualizing diffusion MRI data When: 12-14 March, 2018 Where: Utrecht, Netherlands Details: http://www.exploredti.com/workshop Cheers, Szabolcs

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New Post-Doc Position at Stanford with the Human Connectome Project
by Brooke Staveland 02 Oct '17

02 Oct '17

Dear friends and colleagues, We are currently advertising for a post-doctoral fellow to work on a newly commenced Human Connectome Project focused on developing and testing a connectome model of disordered emotional states. A candidate with a high level of experience with functional magnetic resonance imaging is especially desired. More info can be found in the attached flyer. I would be grateful if you could pass on this info to any people from your labs/departments/etc. who may be interested, or who may forward it to potentially interested candidates. Many thanks for your help, Brooke Staveland Neuroimaging Research Assistant Stanford University School of Medicine Williams PanLab for Precision Psychiatry and Translational Neuroscience Ph. (650) 497-6481

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Freesurfer October 2017