Freesurfer December 2022

freesurfer@nmr.mgh.harvard.edu

75 participants
92 discussions

freesurfer 7.3.2 ERROR: mpr2mni305 failed, see transforms/talairach_avi.log
by 李梦君 02 Jan '23

02 Jan '23

External Email - Use Caution Dear Freesurfer Experts I have installed the freesurfer 7.3.2, ERROR: mpr2mni305 failed has been reported in the recon-all -s T1(filename) -all, following is the recon-all.log. What should I do in to repair this problem Thanks!

2 1

Freeview crashes after installing the software
by Seyedeh Nasim Adnani 30 Dec '22

30 Dec '22

External Email - Use Caution Hello, I have a MacBook Pro with Ventura 13.1 OS, 64 GB, SMC Apple M1 Max. I recently started installing the freesurfer software but unfortunately, a simple volume loading into the freeview crashes without displaying any image. I have tried installing various python versions (2,3) and modifying the PATH but nothing seems to help. Now, I wonder if the software is compatible with my mac. Is there any way I can make it work on my system? Many thanks in advance for your help. Best, Nasim Adnani, Sza0127(a)auburn.edu

1 0

Help: Aparcstats and asegstats not working
by vittal korann 29 Dec '22

29 Dec '22

External Email - Use Caution Hi Freesurfer experts, I am trying to collate all morphological parameters like thickness, area, volume, etc. When I tried executing the command " asegstats2table --subjects Met001 met002 .... --hemi lh --meas area --tablefile Area_aseg_stats.txt ", it failed and I got the below error which is highlighted. File "/usr/local/freesurfer/bin/asegstats2table", line 195 print 'ERROR: subjects are not specified (use --subjects SUBJECTS)' ^ SyntaxError: invalid syntax File "/usr/local/freesurfer/bin/asegstats2table", line 195 print 'ERROR: subjects are not specified (use --subjects SUBJECTS)' ^ SyntaxError: invalid syntax File "/usr/local/freesurfer/bin/aparcstats2table", line 156 print 'ERROR: atleast 1 subject must be provided' ^ SyntaxError: Missing parentheses in call to 'print'. Did you mean print('ERROR: atleast 1 subject must be provided')? File "/usr/local/freesurfer/bin/aparcstats2table", line 156 print 'ERROR: atleast 1 subject must be provided' ^ SyntaxError: Missing parentheses in call to 'print'. Did you mean print('ERROR: atleast 1 subject must be provided')? I am using the Freesurfer version6 and ubuntu 20.04. A similar error was reported in the forum and I also tried the suggested solution by setting python2.7 as the default version. However, nothing has worked out for me. Any help would be highly appreaciated. Thanks, Vittal

1 0

Freesurfer Image Attribute
by Kalluvila, Aryan 29 Dec '22

29 Dec '22

Good morning Freesurfer Team, Is there a certain freesurfer version that needs to be installed in order to get the image attribute? For example, I have freesurfer ubuntu linux 7.2.0 installed but I can't pass through the function fs.Image(xxx) without getting an error. Please let me know. Thanks, Aryan

2 1

password for virtual machine request
by Riccardo Accetta 29 Dec '22

29 Dec '22

External Email - Use Caution Hi, I'm interested on freesurfer project can I have the password to unzip the virtual machine ? Thanks Riccardo Accetta

1 0

Password for FS_7_2_0_Ubuntu_18_04_06.ova.7z
by Steven Keller 28 Dec '22

28 Dec '22

1 0

Training in Advanced Statistical Methods in Neuroimaging and Genetics, April 2023
by ROBERT CARY WELSH 27 Dec '22

27 Dec '22

External Email - Use Caution Hi Folks, Our NIH-funded course, “Training in Advanced Statistical Methods in Neuroimaging and Genetics”, will be held in-person in Salt Lake City, UT, from April 3 – April 14, 2023. This is a course geared to advanced undergraduate students graduate students, postdocs, and junior faculty. Topics include: Bayesian methods of functional connectivity and activation, longitudinal modeling, network neuroscience, polygenic risk scores, multimodal modeling and predictive modeling. The course is a mix of lectures and hands-on computer labs. Our main lecturers include: Martin Lindquist, Johns Hopkins University Mandy Mejia, Indiana University Rick Betzel, Indiana University Anna Docherty, University of Utah To read more about the course and to apply please see: https://secure-web.cisco.com/1mMCzFjpIVXxHtqbxdAnyxeb_su-nbB4mp7sVKpBybhUAU… For more information please write : advancedstatisticscourse(a)utah.edu<mailto:advancedstatisticscourse@utah.edu> Best, Robert Welsh and Anna Docherty

1 0

Pass code
by skalytta＠smail.uni-koeln.de 25 Dec '22

25 Dec '22

External Email - Use Caution Hello, could you please send me the pass code for FS_7_2_0_ubuntu_18_04_06.ova.7z? Thank you! Best regards, Sebastian

1 0

passcode of ova.7z file
by Laura Ramage Patron 23 Dec '22

23 Dec '22

External Email - Use Caution Dear freesurfer developer, Could you send me the pass code of FS_7_2_0_Ubuntu_18_04_06.ova.7z? Thank you very much! Sent from Mail<https://secure-web.cisco.com/1XaT5xlBOMcz-R_8rF1QszKIHSmL3RoZqjPWQcv0AXqQXF…> for Windows

1 0

VM Password
by Lewis Wild 23 Dec '22

23 Dec '22

External Email - Use Caution Hi, I am trying to extract the Virtual Machine but it is asking for a password Please can you supply this Many Thanks

1 0

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Freesurfer December 2022