Freesurfer May 2022

freesurfer@nmr.mgh.harvard.edu

86 participants
124 discussions

whole brain volume measures from SynthSeg+ ??
by jason.millward＠mdc-berlin.de 02 May '22

02 May '22

External Email - Use Caution Hello! I am using SynthSeg (SynthSeg+), and so far testing this on my own data is going well. A question I have for the forum is whether it is possible to get additional measures, such as whole brain volume and total intracranial volume. Both of these (and others) are available from FreeSurfer, but do not seem to be included in the SynthSeg output. I see a discussion thread from a few months ago referring to SamSeg, but I would really prefer to get this from SynthSeg, if possible – it runs much faster, and we are already implementing it These whole brain measures are very important to our work, since we are measuring relative changes in patients over time, and need to normalize the volumes. Is there any way to get this directly from SynthSeg+? Any help is appreciated! Best regards, Jason Millward.

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Re: [Freesurfer] FreeSurfer Ubuntu VirtualBox
by fsbuild 02 May '22

02 May '22

External Email - Use Caution Already replied to your email. - R. On May 1, 2022, at 14:51, Joanna L Eckhardt <jeckhardt(a)health.ucsd.edu> wrote:        External Email - Use Caution        Hello,I apologize if this is a repeat email (I had issues with my email on the subscribing list). I earlier received the password to open the 7Zip file on windows so that I can use FreeSurfer Ubuntu VM, but I received the following error codes shown below when using the passcode : ! C:\Users\joeck\Downloads\FS_7_2_0_ubuntu_18_04_06.ova.7z: Checksum error in the encrypted file C:\Users\joeck\Downloads\FS_7_2_0_ubuntu_18_04_06.ova.7z. Corrupt file or wrong password.Is there an alternative way to open these files? Thank you for your assistance!Joanna--Joanna EckhardtNeurosciences Graduate ProgramUniversity of California, San Diego_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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FreeSurfer Ubuntu VirtualBox
by Joanna L Eckhardt 01 May '22

01 May '22

External Email - Use Caution Hello, I apologize if this is a repeat email (I had issues with my email on the subscribing list). I earlier received the password to open the 7Zip file on windows so that I can use FreeSurfer Ubuntu VM, but I received the following error codes shown below when using the passcode : ! C:\Users\joeck\Downloads\FS_7_2_0_ubuntu_18_04_06.ova.7z: Checksum error in the encrypted file C:\Users\joeck\Downloads\FS_7_2_0_ubuntu_18_04_06.ova.7z. Corrupt file or wrong password. Is there an alternative way to open these files? Thank you for your assistance! Joanna -- Joanna Eckhardt Neurosciences Graduate Program University of California, San Diego

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Re: [Freesurfer] Request for passcode
by fsbuild 30 Apr '22

30 Apr '22

External Email - Use Caution Sending the info to your email shortly. - R. On Apr 30, 2022, at 03:29, Katrine Sand Andersen <katrine.sand(a)psy.ku.dk> wrote:        External Email - Use Caution        Hi, I am installing Freesurfer. Is it possible to get the passcode for the Ubuntu virtual box? Best, Katrine SandPhD fellowAuthorised psychologist University of CopenhagenDepartment of Psychology Øster Farimagsgade 2A1353 København K DIR +45 35 32 51 95Employee profile <image001.png>  How we protect personal data    _______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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Freesurfer May 2022