Freesurfer

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30088 discussions

Re: [Freesurfer] reconall error
by Bruce Fischl 27 Dec '13

27 Dec '13

Hi Rashmi can you try 5.3 and see if it works? Alternatively you can email me the orig.mgz and I can try it Bruce On Wed, 30 Oct 2013, Rashmi Singh wrote: > Hey Bruce, > I ran FreeSurfer recon -all (with flags -use-mritotal and -notal-check > flags) with a data set that failed showing the same error that I had > received earlier. > I am sure have the correct data set. > I am attaching the recon-all.log and the data. > We have FreeSurfer Version 5.1.0 > Please advice. > Thanks, > Rashmi > > On 10/23/13 9:06 AM, "Bruce Fischl" <fischl(a)nmr.mgh.harvard.edu> wrote: > >> Hi Rashmi >> >> what version are you running? If 5.3, upload the subject and I'll take a >> look >> Bruce >> On Tue, 22 Oct 2013, Rashmi Singh wrote: >> >>> Hello FreeSurfer experts, >>> I am trying to run recon all on my data set, but I got following error >>> message. >>> Please help me understand the message and suggest solution. >>> Thanks, >>> Rashmi >>> >>> #@# Skull Stripping Tue Oct 22 13:57:00 CDT 2013 >>> >>> /home/rsingh/storage/labs/pbellgowan/MTBI/RASHMIANALYSIS/ANAL2013/CombT1T >>> 2Practice/FreeSurfer/AA470-2prac/ >>> mri >>> >>> mri_em_register -skull nu.mgz >>> /opt/freesurfer/average/RB_all_withskull_2008-03-26.gca >>> transforms/talairach_with_skull.lta >>> >>> aligning to atlas containing skull, setting unknown_nbr_spacing = 5 >>> reading 1 input volumes... >>> logging results to talairach_with_skull.log >>> reading '/opt/freesurfer/average/RB_all_withskull_2008-03-26.gca'... >>> gcaAllocMax: node dims 64 64 64 >>> gcaAllocMax: prior dims 128 128 128 >>> gcaAllocMax: max_labels 0 >>> average std = 23.1 using min determinant for regularization = 53.4 >>> 0 singular and 5702 ill-conditioned covariance matrices regularized >>> reading 'nu.mgz'... >>> freeing gibbs priors...done. >>> bounding unknown intensity as < 20.2 or > 943.7 >>> total sample mean = 92.0 (1443 zeros) >>> ************************************************ >>> spacing=8, using 3481 sample points, tol=1.00e-05... >>> ************************************************ >>> register_mri: find_optimal_transform >>> find_optimal_transform: nsamples 3481, passno 0, spacing 8 >>> GCAhistoScaleImageIntensities: could not find wm peak >>> resetting wm mean[0]: 117 --> 126 >>> resetting gm mean[0]: 74 --> 74 >>> input volume #1 is the most T1-like >>> using real data threshold=6.0 >>> skull bounding box = (130, 148, 130) --> (130, 148, 130) >>> using (130, 148, 130) as brain centroid... >>> mean wm in atlas = 126, using box (130,148,130) --> (129, 147,129) to >>> find MRI wm >>> WARNING: gca.c::GCAhistoScaleImageIntensities: h_mri->nbins=255, >>> mri_peak=-1 >>> before smoothing, mri peak at 0 >>> WARNING2: gca.c::GCAhistoScaleImageIntensities: h_mri->nbins=255, >>> mri_peak=-1 >>> after smoothing, mri peak at 0, scaling input intensities by inf >>> Linux enders 2.6.32-52-server #114-Ubuntu SMP Wed Sep 11 19:06:34 UTC >>> 2013 x86_64 GNU/Linux >>> >>> recon-all -s AA470-2prac exited with ERRORS at Tue Oct 22 13:57:26 CDT >>> 2013 >>> >>> To report a problem, see >>> http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> >>> >>> >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. > >

2 2

R: Re: R: Re: Tracula -stat
by stdp82＠virgilio.it 27 Dec '13

27 Dec '13

My error. I thought that I should run this command for each subject. Stefano ----Messaggio originale---- Da: ayendiki(a)nmr.mgh.harvard.edu Data: 27-dic-2013 16.51 A: <stdp82(a)virgilio.it> Cc: <freesurfer(a)nmr.mgh.harvard.edu> Ogg: Re: R: Re: [Freesurfer] Tracula -stat Are you running this with only one subject? What are you trying to do? The purpose of this step is to combine measures from multiple subjects. On Fri, 27 Dec 2013, stdp82(a)virgilio.it wrote: > I'm sorry and I'm attaching the files.Thanks, > > Stefano > > > trac-all -stat -c $FREESURFER_HOME/Control01 > INFO: SUBJECTS_DIR is /Applications/freesurfer/subjects/subject_prova > INFO: Diffusion root is /Applications/freesurfer/subjects/subject_prova > Actual FREESURFER_HOME /Applications/freesurfer > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.cst_AS_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.6465 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.FA_Avg.txt > Done in 0.799 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.cst_AS_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.63906 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.FA_Avg.txt > Done in 0.317 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.ilf_AS_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.21324 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.FA_Avg.txt > Done in 0.307 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.ilf_AS_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.10424 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.FA_Avg.txt > Done in 0.269 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.unc_AS_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.58957 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.FA_Avg.txt > Done in 1.128 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.unc_AS_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.21483 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.FA_Avg.txt > Done in 0.36 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/fmajor_PP_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.32681 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.32 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/fminor_PP_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.13356 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.273 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.atr_PP_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.25399 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.3 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.atr_PP_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.18351 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.298 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.cab_PP_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.62361 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.293 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.cab_PP_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.32551 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.27 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.ccg_PP_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.30666 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.273 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.ccg_PP_avg33_mni_flt/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.31858 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.28 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.slfp_PP_avg33_mni_flt/pathstat > s.byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.11608 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.312 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.slfp_PP_avg33_mni_flt/pathstat > s.byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.3463 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.274 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.slft_PP_avg33_mni_flt/pathstat > s.byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.15215 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.306 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.slft_PP_avg33_mni_flt/pathstat > s.byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.mat > INFO: Sampling interval along path is 2.3093 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.FA_Avg.txt > Done in 0.31 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.cst_AS_avg33_mni_bbr/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.bbr.mat > INFO: Sampling interval along path is 2.49298 voxels > Writing mean path to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.mean.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.AD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.RD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.MD.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.FA.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.AD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.RD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.MD_Avg.txt > Writing group table to > /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.FA_Avg.txt > Done in 0.376 sec. > dmri_group done > /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_group --list > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr.inputs.txt --ref > /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Base name of output files: > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr > Text file with list of individual inputs: > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr.inputs.txt > Loading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz > Loading list of inputs from > /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr.inputs.txt > Loading measures along the path from/Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.cst_AS_avg33_mni_bbr/pathstats > .byvoxel.txt > Loading input reference volume from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gz > Loading affine registration from > /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.bbr.mat > Segmentation fault > > > > > ----Messaggio originale---- > Da: ayendiki(a)nmr.mgh.harvard.edu > Data: 27-dic-2013 13.50 > A: <stdp82(a)virgilio.it> > Cc: <freesurfer(a)nmr.mgh.harvard.edu> > Ogg: Re: [Freesurfer] Tracula -stat > > Hi Stefano - As always, it'll be impossible to guess what's causing the > error without seeing at least the log from the command and the > configuration file. > > a.y > > > Hi list, > > > > I'm performing -stat step but this command produces sementation fault > > after loading affine registration .mat. > > Thanks, > > > > Stefan > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer(a)nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and properly > dispose of the e-mail. > > > > >

1 0

R: Re: Tracula -stat
by stdp82＠virgilio.it 27 Dec '13

27 Dec '13

I'm sorry and I'm attaching the files.Thanks, Stefano trac-all -stat -c $FREESURFER_HOME/Control01 INFO: SUBJECTS_DIR is /Applications/freesurfer/subjects/subject_provaINFO: Diffusion root is /Applications/freesurfer/subjects/subject_provaActual FREESURFER_HOME /Applications/freesurfer/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.cst_AS_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.6465 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_flt.FA_Avg.txtDone in 0.799 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.cst_AS_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.63906 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_flt.FA_Avg.txtDone in 0.317 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.ilf_AS_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.21324 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ilf_AS.avg33_mni_flt.FA_Avg.txtDone in 0.307 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.ilf_AS_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.10424 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ilf_AS.avg33_mni_flt.FA_Avg.txtDone in 0.269 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.unc_AS_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.58957 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.unc_AS.avg33_mni_flt.FA_Avg.txtDone in 1.128 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.unc_AS_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.21483 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.unc_AS.avg33_mni_flt.FA_Avg.txtDone in 0.36 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/fmajor_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.32681 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fmajor_PP.avg33_mni_flt.FA_Avg.txtDone in 0.32 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/fminor_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.13356 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/fminor_PP.avg33_mni_flt.FA_Avg.txtDone in 0.273 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.atr_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.25399 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.atr_PP.avg33_mni_flt.FA_Avg.txtDone in 0.3 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.atr_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.18351 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.atr_PP.avg33_mni_flt.FA_Avg.txtDone in 0.298 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.cab_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.62361 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cab_PP.avg33_mni_flt.FA_Avg.txtDone in 0.293 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.cab_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.32551 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.cab_PP.avg33_mni_flt.FA_Avg.txtDone in 0.27 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.ccg_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.30666 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.ccg_PP.avg33_mni_flt.FA_Avg.txtDone in 0.273 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.ccg_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.31858 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.ccg_PP.avg33_mni_flt.FA_Avg.txtDone in 0.28 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.slfp_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.11608 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slfp_PP.avg33_mni_flt.FA_Avg.txtDone in 0.312 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.slfp_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.3463 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slfp_PP.avg33_mni_flt.FA_Avg.txtDone in 0.274 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.slft_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.15215 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.slft_PP.avg33_mni_flt.FA_Avg.txtDone in 0.306 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_fltText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.slft_PP_avg33_mni_flt/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.flt.matINFO: Sampling interval along path is 2.3093 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/rh.slft_PP.avg33_mni_flt.FA_Avg.txtDone in 0.31 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbrText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.bbr.matINFO: Sampling interval along path is 2.49298 voxelsWriting mean path to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.mean.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.AD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.RD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.MD.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.FA.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.AD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.RD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.MD_Avg.txtWriting group table to /Applications/freesurfer/subjects/subject_prova/stats/lh.cst_AS.avg33_mni_bbr.FA_Avg.txtDone in 0.376 sec.dmri_group done/Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_group --list /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr.inputs.txt --ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz --out /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoBase name of output files: /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbrText file with list of individual inputs: /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr.inputs.txtLoading output reference volume from /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gzLoading list of inputs from /Applications/freesurfer/subjects/subject_prova/stats/rh.cst_AS.avg33_mni_bbr.inputs.txtLoading measures along the path from /Applications/freesurfer/subjects/subject_prova/Control01/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txtLoading input reference volume from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/dtifit_FA.nii.gzLoading affine registration from /Applications/freesurfer/subjects/subject_prova/Control01/dmri/xfms/diff2mni.bbr.matSegmentation fault ----Messaggio originale---- Da: ayendiki(a)nmr.mgh.harvard.edu Data: 27-dic-2013 13.50 A: <stdp82(a)virgilio.it> Cc: <freesurfer(a)nmr.mgh.harvard.edu> Ogg: Re: [Freesurfer] Tracula -stat Hi Stefano - As always, it'll be impossible to guess what's causing the error without seeing at least the log from the command and the configuration file. a.y > Hi list, > > I'm performing -stat step but this command produces sementation fault > after loading affine registration .mat. > Thanks, > > Stefan > _______________________________________________ > Freesurfer mailing list > Freesurfer(a)nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

2 1

Tracula -stat
by stdp82＠virgilio.it 27 Dec '13

27 Dec '13

Hi list, I'm performing -stat step but this command produces sementation fault after loading affine registration .mat. Thanks, Stefan

2 1

appropriate graphic card in freeview and tksurfer
by charujing123 27 Dec '13

27 Dec '13

Hi Gari and others, When I ran freeview -f $SUBJECTS_DIR/fsaverage/surf/lh.inflated:overlay=lh.gender_age.glmdir/lh-Avg-thickness-age-Cor/mc-z.negative.sig.cluster.mgh:overlay_threshold=2,5:annot=lh.gender_age.glmdir/lh-Avg-thickness-age-Cor/mc-z.negative.sig.ocn.annot in Windows server VM workstation, I couldnot configure the overlay as it is blocked there and without any response. If I want to install a different one, which brand and version should I buy? Thanks. All the best. 2013-12-27 charujing123

1 0

Rejoindre mon réseau sur LinkedIn
by Sinem Burcu Erdogan via LinkedIn 26 Dec '13

26 Dec '13

LinkedIn ------------ Sinem Burcu Erdogan souhaite se connecter à vous sur LinkedIn : ------------------------------------------ Je vous invite à faire partie de mon réseau professionnel en ligne sur le site LinkedIn. Accepter l'invitation de Sinem Burcu Erdogan http://www.linkedin.com/e/-qq80um-hpoic7zr-14/qaAr-Z_86TRZ5lXG-dA9kZQ49qSe5… Voir l'invitation de Sinem Burcu Erdogan http://www.linkedin.com/e/-qq80um-hpoic7zr-14/qaAr-Z_86TRZ5lXG-dA9kZQ49qSe5… ------------------------------------------ Quel est l'intérêt de faire partie du réseau de Sinem Burcu Erdogan ? Le réseau de Sinem Burcu Erdogan développera votre propre réseau : Si vous acceptez l'invitation de Sinem Burcu Erdogan, vous pourrez voir qui vous connaissez dans son réseau et demander à Sinem Burcu Erdogan de vous présenter. Appartenir à un réseau est toujours un plus pour votre carrière. -- (c) 2012, LinkedIn Corporation

1 0

manual edit
by irene saviozzi 26 Dec '13

26 Dec '13

Hello, I'm learning to use freesurfer. I would understand if the tissue that is not brain (i.e. meninges), which is not automatically included in pial, must be deleted with the manual editing or not. I would also like to understand how add cortex manually in the pial surface with tkmedit. I attach two screenshots as examples. Thank you Irene

2 1

fsl & T2pial
by Octavian Lie 24 Dec '13

24 Dec '13

Dear All, I plan starting running the -FLAIRpial flag for pial refinement, after recently upgrading freesurfer to dev (12/19/2013), centos6 86X64 build. I installed the new fs according to the wiki guidelines. I read on the forum that FSL_DIR has to be set up, and FSL has to be installed for bbregister to work. The default wiki installation does not set FSL_DIR. I found a bbregister file dated 12/17/2013 by Doug in freesurfer/bin, so it could be that the above issue has been solved, please confirm. Octavian

1 0

Re: [Freesurfer] kvlQuantifyHippocampalSubfieldSegmentations Usage
by Salil Soman 24 Dec '13

24 Dec '13

Hi, Have been able to run kvlQuantifyHippocampalSubfieldSegmentations.sh to get hippocampal subfield segmentation number of voxels. How do I convert these values into volumes? I am guessing the voxel size of the original image is not the correct conversion factor. Also, I have not been able to find any details regarding the doPartialVolumedSegmentation vs doNonPartialVolumedSegmentation options for this code. Can anyone point me to more details of why one would use one method vs the other? Thanks, -Salil

2 1

P-value of interaction term in DODS
by jh kim 23 Dec '13

23 Dec '13

Dear Doug and experts Using DODS model in QDEC, I've found 2 significant clusters in whole-brain cortical thickness analysis between controls and patients (2 group, 1 factor), controlling for the effect of age (one covariate). My question is how can I obtain p value for interaction term (group*age) in each cluster? Is it possible to do that analysis in FreeSurfer pipeline? Or should I extract individual cortical thickness of each cluster and test this interaction term using statistics software (e.g., SPSS)? Thank you in advance for your help. Kim

2 2

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