Freesurfer

freesurfer@nmr.mgh.harvard.edu

14 participants
30063 discussions

Re: [Freesurfer] pop up does not get focus
by fsbuild 16 Jul '23

16 Jul '23

External Email - Use Caution What you report looks like an issue with WSL and not the X-Ming X-server or the fressurfer distribution.  You could try following the advice in the postings below. This posting mentions focus and user input may be getting lost if the window has gone into “select” mode,  stackoverflow.com/questions/53939435/wsl-terminal-forgets-to-update-and-los… This posting recommends disabling Linux GUI support by setting guiapplications=false in your %USERPROFILE%\.wslconfig file.  I’m not sure about this, because I’ve never seen this previously reported or had to try that edit. github.com/microsoft/wslg/issues/443 - R. On Jul 16, 2023, at 15:36, Tsahi Asher <tsahi.asher(a)mail.huji.ac.il> wrote:        External Email - Use Caution        Hello,I have a problem when i use freeview.Setup:Windows 11wsl ubuntu 22.04windows xserver - xming (vcxsrv) 1.20.14.0 with the following parameters<XLaunch WindowMode="MultiWindow" ClientMode="NoClient" LocalClient="False" Display="-1" LocalProgram="xcalc" RemoteProgram="xterm" RemotePassword="" PrivateKey="" RemoteHost="" RemoteUser="" XDMCPHost="" XDMCPBroadcast="False" XDMCPIndirect="False" Clipboard="True" ClipboardPrimary="True" ExtraParams="" Wgl="False" DisableAC="False" XDMCPTerminate="False"/>freesurfer for ubuntu 7.4.1problem:When i use the app some popup windows do not get focused, I have no way to make any button of the popup work, not with the mouse and not with the keyboard, not any button in the popup, but also not main windows buttons (close maximize etc), i also can not drag and move the windows. Attached are two examples from the freeview app. The "load surface overlay" is a pop up that is responding, the "configure overlay" pop up is the one that i can not get to work.Thank you,Tsahi<load.jpg><configure.jpg>_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

1 0

Re: [Freesurfer] Freesurfer installation issue
by fsbuild 16 Jul '23

16 Jul '23

External Email - Use Caution  Try using apt to do the install, and you could also preface the package name with its absolute path, /path/to/package $ sudo apt install /path/to/package/freesurfer_7.2.0_amd64.deb - R. On Jul 15, 2023, at 05:02, Ramesh Babu <mgrameshbabu2013(a)gmail.com> wrote:        External Email - Use Caution        Dear Expert,I am trying to install Freesurfer-7.2 .deb package. I had this package earlier, and after formatting my system now, I am trying to install Freesurfer again. But I am facing the following issues. 'freesurfer_7.2.0_amd64.deb' is not a Debian format archivedpkg: error processing archive freesurfer_7.2.0_amd64.deb (--install): dpkg-deb --control subprocess returned error exit status 2Errors were encountered while processing: freesurfer_7.2.0_amd64.debKindly request you to provide a solution to solve this issue.Thanks in advanceRamesh_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

1 0

pop up does not get focus
by Tsahi Asher 16 Jul '23

16 Jul '23

1 0

Ask for help
by 楚佳悦 16 Jul '23

16 Jul '23

External Email - Use Caution Dear freesurfer: I don't want to receive external emails from freesurfer. Please help me cancel it! Thank you very much! Best wishes, Jiayue

2 1

Re: [Freesurfer] Password 7zip Ubuntu VM
by m tl 16 Jul '23

16 Jul '23

External Email - Use Caution Hello I hope this email finds you well. I am reaching out to inquire about obtaining the password for the 7zip file associated with the FreeSurfer VirtualBox VM Image. I recently downloaded the image from your website and encountered difficulty accessing its contents due to the password protection. I would be grateful if you could provide me with the necessary password or any instructions on how to obtain it. If there are any additional requirements or steps involved in the process, please let me know, and I will gladly comply with them. Thank you very much for your time and consideration. I look forward to your prompt response and to continuing my research using FreeSurfer. Best regards, Martin

1 0

Freesurfer virtual machine zip password
by José 15 Jul '23

15 Jul '23

External Email - Use Caution Dear Freesurfer mailing list, I just downloaded the ubuntu virtual machine from the freesurfer wiki site, to run freesurfer in windows. However, when unzipping the file I'm asked for a password. Could you please provide me with the password so I can set up the VM and get started with freesurfer? Thanks in advance. Best regards, José Silva

1 0

Freesurfer installation issue
by Ramesh Babu 15 Jul '23

15 Jul '23

External Email - Use Caution Dear Expert, I am trying to install Freesurfer-7.2 .deb package. I had this package earlier, and after formatting my system now, I am trying to install Freesurfer again. But I am facing the following issues. 'freesurfer_7.2.0_amd64.deb' is not a Debian format archive dpkg: error processing archive freesurfer_7.2.0_amd64.deb (--install): dpkg-deb --control subprocess returned error exit status 2 Errors were encountered while processing: freesurfer_7.2.0_amd64.deb Kindly request you to provide a solution to solve this issue. Thanks in advance Ramesh

1 0

Partnership Proposal for Freesurfer Expert Training with Universitas Indonesia
by Pukovisa Prawiroharjo 15 Jul '23

15 Jul '23

External Email - Use Caution Dear Freesurfer Team, Greetings. My name is dr. Pukovisa Prawiroharjo, Sp.S(K), PhD. I am a lecturer and researcher at the Department of Neurology Faculty of Medicine Universitas Indonesia (UI) in Indonesia. I am pleased to inform you that we have been awarded a grant from the UI Incubate program. This program is aimed at promoting growth in university startups that focus on innovative solutions. Our project revolves around the concept of a "Brain Analysis Consultation Service." Our primary goal is to democratize access to predictive analytics for neurodegenerative diseases, making such advanced techniques more available to the general public. The business model is to build a clinic for brain analysis using Freesurfer as a core element of our service. The data given by the MRI will be used to analyze and predict neurodegenerative diseases from our patients. The service we aim to offer will allow patients to consult with us about their Freesurfer results for our team to analyze. Through this, we hope to give them a clearer understanding of their condition, helping predict the trajectory of their neurodegenerative disease more accurately. With this in mind, we would like to invite your team to conduct an expert class on Freesurfer for us. This class will surely boost our understanding of the software and improve the efficiency and effectiveness of our work. We sincerely hope this proposal interests you and aligns with your mission to further knowledge and research in neuroscience. If so, we would be delighted to discuss this further and provide you with any more details you may need. Thank you for considering our proposal. We look forward to the potential of working together for a common goal. Best regards, *Pukovisa Prawiroharjo, M.D., Sp.N, Subsp. NGD (K), PhD* Neurobehavior Consultant, Neurology Specialist Neurology Department, Faculty of Medicine, Universitas Indonesia Chair of Bioethics Cluster IMERI UI Chair of International Policy Div, Board of Development Med Services IDI

1 0

(no subject)
by Pukovisa Prawiroharjo 15 Jul '23

15 Jul '23

1 0

Longitudinal pipeline for FreeSurfer (v7.3.2)
by Jackson Lee 13 Jul '23

13 Jul '23

External Email - Use Caution Hi there, I am hoping to process some longitudinal data using the longitudinal recon-all pipeline available in FreeSurfer: https://secure-web.cisco.com/1Y9uqixBqGC2B0XHSMg2zr4QS96oUVSkkZcMdhRqdEkVD1… Will this pipeline work for FreeSurfer v7.3.2? I cannot see any resources to suggest this is the case. Additionally, I am hoping to conduct some longitudinal analysis using the hippocampal subfield pipeline: https://secure-web.cisco.com/1ILqdmv74otr5LeRS7UQz83p5UDddkh5pv-Luvs5PHnW-6… Would the best course of action be to run recon-all with the longitudinal pipeline first (assuming it is applicable for freeSurfer v7.3.2) and then use the longitudinal command for post-hoc subfield analysis?: segmentHA_T1_long.sh <baseID> [SUBJECTS_DIR] Thank you, Jack

2 1

Jump to page:

2026

2025

2024

2023

2022

2021

2020

2019

2018

2017

2016

2015

2014

2013

2012

2011

2010

2009

2008

2007

2006

2005

2004

Freesurfer