Freesurfer

freesurfer@nmr.mgh.harvard.edu

18 participants
30066 discussions

Freesurfer Image Attribute
by Kalluvila, Aryan 29 Dec '22

29 Dec '22

Good morning Freesurfer Team, Is there a certain freesurfer version that needs to be installed in order to get the image attribute? For example, I have freesurfer ubuntu linux 7.2.0 installed but I can't pass through the function fs.Image(xxx) without getting an error. Please let me know. Thanks, Aryan

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password for virtual machine request
by Riccardo Accetta 29 Dec '22

29 Dec '22

External Email - Use Caution Hi, I'm interested on freesurfer project can I have the password to unzip the virtual machine ? Thanks Riccardo Accetta

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Password for FS_7_2_0_Ubuntu_18_04_06.ova.7z
by Steven Keller 28 Dec '22

28 Dec '22

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Training in Advanced Statistical Methods in Neuroimaging and Genetics, April 2023
by ROBERT CARY WELSH 27 Dec '22

27 Dec '22

External Email - Use Caution Hi Folks, Our NIH-funded course, “Training in Advanced Statistical Methods in Neuroimaging and Genetics”, will be held in-person in Salt Lake City, UT, from April 3 – April 14, 2023. This is a course geared to advanced undergraduate students graduate students, postdocs, and junior faculty. Topics include: Bayesian methods of functional connectivity and activation, longitudinal modeling, network neuroscience, polygenic risk scores, multimodal modeling and predictive modeling. The course is a mix of lectures and hands-on computer labs. Our main lecturers include: Martin Lindquist, Johns Hopkins University Mandy Mejia, Indiana University Rick Betzel, Indiana University Anna Docherty, University of Utah To read more about the course and to apply please see: https://secure-web.cisco.com/1mMCzFjpIVXxHtqbxdAnyxeb_su-nbB4mp7sVKpBybhUAU… For more information please write : advancedstatisticscourse(a)utah.edu<mailto:advancedstatisticscourse@utah.edu> Best, Robert Welsh and Anna Docherty

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Pass code
by skalytta＠smail.uni-koeln.de 25 Dec '22

25 Dec '22

External Email - Use Caution Hello, could you please send me the pass code for FS_7_2_0_ubuntu_18_04_06.ova.7z? Thank you! Best regards, Sebastian

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passcode of ova.7z file
by Laura Ramage Patron 23 Dec '22

23 Dec '22

External Email - Use Caution Dear freesurfer developer, Could you send me the pass code of FS_7_2_0_Ubuntu_18_04_06.ova.7z? Thank you very much! Sent from Mail<https://secure-web.cisco.com/1XaT5xlBOMcz-R_8rF1QszKIHSmL3RoZqjPWQcv0AXqQXF…> for Windows

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VM Password
by Lewis Wild 23 Dec '22

23 Dec '22

External Email - Use Caution Hi, I am trying to extract the Virtual Machine but it is asking for a password Please can you supply this Many Thanks

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[WARNING: ATTACHMENT UNSCANNED]Volumetric extraction from volumetric mask in MNI space
by Beatriz Cavendish 23 Dec '22

23 Dec '22

External Email - Use Caution Hello, I would like to know the step by step to obtain volume (mm3) from a volumetric mask in the MNI space (follow the attached nifti file). I checked the forum but the tutorials are for surface extraction and cortical thickness. Yours sincerely, -- Beatriz Araújo Cavendish, MSc PhD student | Psychologist University of São Paulo São Paulo/SP - Brazil

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Re: [Freesurfer] lh.pial lh.pialT1n same file?
by Renew Andrade 22 Dec '22

22 Dec '22

External Email - Use Caution Dear Yujing: I wasn’t aware that there was an answer to my email that’s the reason it took me a while to write back. But I answer here. Yes I mean lh.pial.T1. I don’t have any other lh.pial. The recon-all command is properly correct like recon-all -all -i -s -openmp 8. Yes the freesurfer version is 7.1.1. Best, Rene Andrade. Hi Rene, Do you mean lh.pial.T1? Do you have any other lh.pial* files in the directory? What is your recon-all command line? And can you also provide the Freesurfer version you are running? Best, Yujing -----Original Message----- From: freesurfer-boun...(a)nmr.mgh.harvard.edu <freesurfer-boun...(a)nmr.mgh.harvard.edu> On Behalf Of Renew Andrade Sent: Tuesday, December 13, 2022 7:24 AM To: freesurfer(a)nmr.mgh.harvard.edu Subject: [Freesurfer] lh.pial lh.pialT1n same file? External Email - Use Caution Dear experts: I am wondering if lh.pial and lh.pialT1 are the same files. I don’t have lh.pial is that an error from recon-all? Should I rerun recon-all. Or just autorecon-pial? Would that change anything? Best, Rene Andrade. _______________________________________________ Freesurfer mailing list Freesurfer(a)nmr.mgh.harvard.edu https://secure-web.cisco.com/1LCc5ul3ZUaRdFDtH5um-8jSLqyO6Y34dKd_-lEHcjceUh… _______________________________________________ Freesurfer mailing list Freesurfer(a)nmr.mgh.harvard.edu https://secure-web.cisco.com/1LCc5ul3ZUaRdFDtH5um-8jSLqyO6Y34dKd_-lEHcjceUh… The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://secure-web.cisco.com/1p9vuo0RkhGo0Iv6s95QbouvIcUud21_PCVthVxZ9GM4V6… <https://secure-web.cisco.com/1p9vuo0RkhGo0Iv6s95QbouvIcUud21_PCVthVxZ9GM4V6…> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.

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Asking for a password for my freesurfer
by Rana Fawzy 22 Dec '22

22 Dec '22

External Email - Use Caution Dear freesurfer team,Thanks for the great software with amazing details and capabilities.Thanks too for the help and the free registration code.Now, i am prompted for a pass code to expand the zip file to complete the installation process. Can you please send me the password for (FS_7_2_0_ubuntu_18_04_06.ova) zip file.. In order to be able to install the software on my virtual machine?? I am waiting for your help.Thanks alot Sent from Yahoo Mail on Android

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