Hello FS Group,
I get "segmentation fault" error during autorecon2 step.
I checked the talairach transformation. It seemed to be fine.
The skull strip did not seem to be correct. I manually edited the
brainmask.mgz and saved the data. But still I get the error.
I am not sure what the problem is.
Any help would be great!
I have the output form mri_info for the original surface. .
Thanks.
Mithra.
Output for mri_info:
mri_info $SUBJECTS_DIR/asm1_004/mri/orig.mgz
Volume information for /usr/pubsw/freesurfer/subjects/asm1_004/mri/orig.mgz
type: MGH
dimensions: 301 x 301 x 301
voxel sizes: 1.0000, 1.0000, 1.0000
type: UCHAR (0)
fov: 301.000
xstart: -150.5, xend: 150.5
ystart: -150.5, yend: 150.5
zstart: -150.5, zend: 150.5
TR: 4.97 msec, TE: 1.21 msec, TI: 500.00 msec, flip angle:
11.00 deg rees
nframes: 1
ras xform present
xform info: x_r = -1.0000, y_r = 0.0000, z_r = 0.0000, c_r = 0.0000
: x_a = 0.0000, y_a = 0.0000, z_a = 1.0000, c_a = 40.3653
: x_s = 0.0000, y_s = -1.0000, z_s = 0.0000, c_s = -26.5037
talairach xfm :
/usr/pubsw/freesurfer/subjects/asm1_004/mri/transforms/talairach .xfm
Orientation : LIA
Primary Slice Direction: coronal
voxel to ras transform:
-1.0000 0.0000 0.0000 150.5000
0.0000 0.0000 1.0000 -110.1347
0.0000 -1.0000 0.0000 123.9963
0.0000 0.0000 0.0000 1.0000
voxel-to-ras determinant -1
ras to voxel transform:
-1.0000 -0.0000 -0.0000 150.5000
-0.0000 -0.0000 -1.0000 123.9963
0.0000 1.0000 0.0000 110.1347
0.0000 0.0000 0.0000 1.0000