Hello all,
One of the subjects I was running exited with ERRORS at the autorecon2 stage.
This is how it exited.
INFO: assuming .mgz format
$Id: mris_fix_topology.c,v 1.41 2006/02/06 19:41:59 nicks Exp $
$Id: mrisurf.c,v 1.441.2.1 2006/03/06 21:12:31 greve Exp $
before topology correction, eno=-62 (nv=111893, nf=223972, ne=335927, g=32)
using quasi-homeomorphic spherical map to tessellate cortical surface...
Correction of the Topology
Finding true center and radius of Spherical Surface...done
Surface centered at (0,0,0) with radius 100.0 in 8 iterations
marking ambiguous vertices...
6825 ambiguous faces found in tessellation
segmenting defects...
defect 7 : 4 vertices have been added to the surface
defect 21 : 13 vertices have been added to the surface
defect 43 : 11 vertices have been added to the surface
defect 44 : 3 vertices have been added to the surface
defect 48 : 5 vertices have been added to the surface
defect 53 : 9 vertices have been added to the surface
total of 45 vertices has been added to the surface
analyzing defects...
mrisDefectAnalysis : defect 21 overlap defect 20
reading input surface /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/maketemp/norm/subj21/surf/lh.qsphere.nofix...
reading brain volume from brain...
reading wm segmentation from wm...
Linux ernie 2.6.17.1 #4 PREEMPT Sat Aug 5 09:35:33 MST 2006 i686 pentium4 i386 GNU/Linux
I have also attached the recon-all.log file for reference.
Thanks in advance for your suggestions.
Regards
Chacko Cherian
Arizona State University.