Freesurfer

freesurfer@nmr.mgh.harvard.edu

19 participants
30132 discussions

Extract Area from ROI
by Hua, Jessica 29 Oct '20

29 Oct '20

External Email - Use Caution Hi FreeSurfer Experts, I am tryinig to extract area from a volume-defined ROI. I used code from the FreeSurfer websiite (https://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCorticalThickness) to extract thickness, but I was not able to extract area. Here is my code for thickness: mri_surf2surf --s ../../sub-004_session1 --trgsubject ../../fsaverage --hemi lh --sval lh.thickness --tval lh.thickness.fsaverage.mgh mri_segstats --seg $SUBJECTS_DIR/../../fsaverage/label/lh.fsaverage.MFGbin.mgh --in lh.thickness.fsaverage.mgh --sum segstats-lh.thickness.MFGbin.txt How do I modify to extract area? Thank you! Jessica

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Re: [Freesurfer] Please help me. I am such with this for too long!
by Basavaraju, Rakshathi 28 Oct '20

28 Oct '20

External Email - Use Caution Dear Doug, Unfortunately I don't see your response to my email though there is a Re:"my subject" at the beginning. Get Outlook for iOS<https://aka.ms/o0ukef> ________________________________ From: freesurfer-bounces(a)nmr.mgh.harvard.edu <freesurfer-bounces(a)nmr.mgh.harvard.edu> on behalf of freesurfer-request(a)nmr.mgh.harvard.edu <freesurfer-request(a)nmr.mgh.harvard.edu> Sent: Tuesday, October 27, 2020 6:48:06 PM To: freesurfer(a)nmr.mgh.harvard.edu <freesurfer(a)nmr.mgh.harvard.edu> Subject: [EXTERNAL] Freesurfer Digest, Vol 200, Issue 55 Send Freesurfer mailing list submissions to freesurfer(a)nmr.mgh.harvard.edu To subscribe or unsubscribe via the World Wide Web, visit https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.e… or, via email, send a message with subject or body 'help' to freesurfer-request(a)nmr.mgh.harvard.edu You can reach the person managing the list at freesurfer-owner(a)nmr.mgh.harvard.edu When replying, please edit your Subject line so it is more specific than "Re: Contents of Freesurfer digest..." Today's Topics: 1. Re: Convert FSL .nii ROI into FreeSurfer Label (Douglas N. Greve) 2. Re: Fwd: Freesurfer edits (Douglas N. Greve) 3. Re: Please help me. Stuck with this for too long!!! (Douglas N. Greve) 4. Re: question about PETSurfer (Douglas N. Greve) 5. Re: Issues with Surface segmentation (Sierra Ann R. Jarvis) ---------------------------------------------------------------------- Message: 1 Date: Tue, 27 Oct 2020 18:05:37 -0400 From: "Douglas N. Greve" <dgreve(a)mgh.harvard.edu> Subject: Re: [Freesurfer] Convert FSL .nii ROI into FreeSurfer Label To: <freesurfer(a)nmr.mgh.harvard.edu> Message-ID: <6b459e19-c830-eda7-d365-484a77ca334b(a)mgh.harvard.edu> Content-Type: text/plain; charset="windows-1252" A surface label or a volume label? On 10/25/2020 2:17 PM, Hua, Jessica wrote: > > ????????External Email - Use Caution > > Hi FreeSurfer Experts, > > How can I convert a .nii ROI into a FreeSurfer label? I was able to > convert the .nii into a .mgh file but could not figure out how to > convert to a label file. > > Thank you, > > Jessica > > _______________________________________________ > Freesurfer mailing list > Freesurfer(a)nmr.mgh.harvard.edu > https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.e…

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Problem with pial and white matter segmentation
by Edoardo Pinzuti 28 Oct '20

28 Oct '20

External Email - Use Caution Dear Freesurfer team, I am having trouble with the pial and white matter segmentation of one subject (you can see the picture attached), I tried to set control points but it did not work completely. The segmentation looks not good at all for some slices, do you know what I could do ? Thanks Edoardo

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Issues with Surface segmentation
by Sierra Ann Jarvis 27 Oct '20

27 Oct '20

External Email - Use Caution Hello FreeSurfer Developers, I am attempting to run this subject through a longitudinal process. I have successfully ran and edited the cross-sectional and the .base. My problem occurs when I run the .longs. I do not receive an error in the recon-all.log, but the surfaces on the image when I pull it up on FreeView are very jumbled. Below I have attached a screenshot of a coronal slice to give you an idea of what I am dealing with. I ran the subject through: recon-all -long sub_post/ sub.base -all FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c Recon-all log last line: recon-all -s sub-5504_post.long.sub-5504.base finished without error at Fri Oct 16 13:44:10 MDT 2020 Thank you for your time, Sierra Jarvis

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question about PETSurfer
by 蒋袁芳 27 Oct '20

27 Oct '20

External Email - Use Caution Hello Freesurfer Developers, I have some questions about why the first step of PETSurfer needs to create gtmseg.mgz segmentation. I noticed that the differences between gtmseg.mgz and aseg.mgz are the gtmseg.mgz has a higher resolution and also to separate the pons and the vermis from the brainstem and the cerebellar. I would like to know whether the reason to create the gtmseg.mgz segmentation is because the ROI is based on the Pons? If so, I also have read some other articles that the ROI is based in other regions. Why does the Freesurfer choose Pons instead? Also, what is the purpose of separating the vermis from the cerebellar? Is the reason to create the gtmseg.mgz segmentation just for the system to run the PVC? looking forward to your reply.

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Please help me. Stuck with this for too long!!!
by Basavaraju, Rakshathi 27 Oct '20

27 Oct '20

External Email - Use Caution Dear Freesurfer team, I have been trying to extract local gyrification index in a dataset according to a label which I have created. 1) First of all, I extracted lGI as per DKT areas, which one is lGI value in the ?h.pial_lgi.stats file (derived on running a lGI recon?) # ColHeaders StructName NumVert SurfArea GrayVol ThickAvg ThickStd MeanCurv GausCurv FoldInd CurvInd caudalanteriorcingulate 1094 774 2285 3.234 0.889 0.129 0.031 15 1.3 Is the lGI of caudal anterior cingulate 3.234 or 1.3? 2) I could register a label which I have created to the surface of individual subjects using mrilabel2label which ran alright, and I could view the label on the surface of the individual subject intact on freeview. But after that I am unable to extract lGI value from the designated label only using mris_anatomicalstats. I used the following command: mris_anatomical_stats -l label/outlabelbase-0001.label -f stats/occipital_lGI.stats FS6-LGI-05-Feb-2020_schiz018_G1_MPRAGE rh pial_lgi This throws the error: #MRISread: file '/mnt/share/projects/provenzano/Human/CHR_Rakshathi/LGI/FS6-LGI-05-Feb-2020_schiz018_G1_MPRAGE/surf/rh.pial_lgi' has many more faces than vertices! Probably trying to use a scalar data file as a surface! Then I converted rh_pial.lgi to rh_pial.lgi.asc: mris_convert -c rh.pial_lgi rh.white rh.pial_lgi.asc and then ran: mris_anatomical_stats -l label/outlabelbase-0001.label -f stats/occipital_lGI.stats FS6-LGI-05-Feb-2020_schiz018_G1_MPRAGE rh pial_lgi.asc then the error: Segmentation fault (core dumped) Kindly help me, this analysis is way overdue, and it is seeming like an endless tunnel only of new errors.... Dr. Rakshathi Basavaraju (MD Psychiatry) Postdoctoral Research Scientist Taub Institute for Research on Alzheimer's Disease and the Aging Brain Columbia University Medical Centre 622 West, 168th Street, New York - 10032 E-Mail: rb3419(a)cumc.columbia.edu<mailto:rb3419@cumc.columbia.edu> https://indiaalliance.org/fellow/rakshathi-basavaraju

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Freesurfer edits
by Alexopoulos, Dimitrios 27 Oct '20

27 Oct '20

External Email - Use Caution Hi freesurfer editing experts. Below are snapshots of the brainmask, aseg and wm.mgz for a 2 year old run through FS 7.1.1 I'm hoping for feedback on the best way to make the relevant edits to the three blue-circled regions. 1. In the superior regions I think control points will help to pick up some WM to help fuill 2. In the left hemisphere medial prefrontal (gyrus rectus) regions, the WM is overestimated. I presume removing WM voxels from the wm.mgz is the best approach? 3. The left temporal pole region is missing GM/cortex and there really isn't any WM that would help with controls points or adding WM voxels. How can I add GM to this area? [cid:image007.jpg@01D6A6CB.3399D5E0][cid:image008.jpg@01D6A6CB.3399D5E0] [cid:image009.jpg@01D6A6CB.3399D5E0][cid:image010.jpg@01D6A6CB.3399D5E0] ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.

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Convert FSL .nii ROI into FreeSurfer Label
by Hua, Jessica 27 Oct '20

27 Oct '20

External Email - Use Caution Hi FreeSurfer Experts, How can I convert a .nii ROI into a FreeSurfer label? I was able to convert the .nii into a .mgh file but could not figure out how to convert to a label file. Thank you, Jessica

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mri_convert error
by Georgina Angelopoulou 27 Oct '20

27 Oct '20

External Email - Use Caution Dear Freesurfer Developers, I am attempting to convert some dicom files to mgz via mri_convert command. However, for only 5 participants from my cohort I get the following error. Any suggestions of how to resolve the problem? Thank you in advance, Georgina (base) Georgias-MBP:HC21 georgina$ mri_convert 1.3.46.670589.11.38127.5.0.4944.2019102316491068177.dcm 001.mgz mri_convert.bin 1.3.46.670589.11.38127.5.0.4944.2019102316491068177.dcm 001.mgz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from 1.3.46.670589.11.38127.5.0.4944.2019102316491068177.dcm... Starting DICOMRead2() dcmfile = /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491068177.dcm dcmdir = /Users/georgina/Downloads/HD/HC21 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491068177.dcm break DICOMRead.c:5228 Ref Series No = 201 Found 172 files, checking for dicoms ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490976021.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490977022.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490977023.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490978024.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490978025.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490979026.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490980027.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490980028.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490981029.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490982030.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490983031.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490983032.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490984033.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490985034.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490985035.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490986036.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490986037.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490986038.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490987039.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490988040.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490992041.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490992042.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490993043.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490993044.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490994045.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490994046.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490995047.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490995048.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490996049.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490996050.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490997051.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490997052.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490998053.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490998054.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490999055.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490999056.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491000057.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491000058.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491001059.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491001060.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491002061.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491002062.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491003063.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491003064.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491004065.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491004066.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491005067.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491006068.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491007069.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491007070.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491008071.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491008072.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491009073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491009074.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491010075.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491010076.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491011077.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491011078.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491012079.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491013080.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491014081.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491014082.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491015083.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491015084.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491016085.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491016086.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491017087.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491017088.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491018089.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491018090.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491019091.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491019092.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491020093.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491020094.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491021095.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491021096.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491022097.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491023098.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491023099.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491024100.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491024101.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491025102.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491025103.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491026104.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491027105.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491027106.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491028107.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491028108.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491029109.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491029110.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491030111.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491031112.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491031113.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491032114.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491032115.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491033116.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491034117.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491034118.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491035119.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491036120.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491036121.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491037122.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491037123.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491038124.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491038125.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491039126.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491039127.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491041128.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491041129.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491042130.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491043131.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491043132.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491044133.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491044134.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491045135.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491045136.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491046137.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491046138.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491047139.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491048140.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491048141.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491049142.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491049143.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491050144.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491050145.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491051146.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491051147.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491052148.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491052149.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491053150.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491054151.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491054152.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491055153.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491055154.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491056155.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491056156.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491057157.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491057158.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491058159.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491058160.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491059161.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491060162.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491060163.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491061164.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491061165.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491062166.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491062167.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491063168.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491063169.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491064170.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491064171.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491065172.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491065173.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491066174.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491066175.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491067176.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491068177.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491068178.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491069179.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491069180.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491070181.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491070182.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491071183.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491072184.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491072185.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491074186.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491074187.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491075188.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491075189.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491076190.dcm break DICOMRead.c:5228 Found 170 dicom files in series. ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490976021.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490977022.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490977023.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490978024.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490978025.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490979026.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490980027.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490980028.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490981029.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490982030.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490983031.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490983032.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490984033.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490985034.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490985035.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490986036.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490986037.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490986038.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490987039.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490988040.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490992041.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490992042.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490993043.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490993044.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490994045.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490994046.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490995047.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490995048.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490996049.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490996050.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490997051.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490997052.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490998053.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490998054.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490999055.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490999056.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491000057.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491000058.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491001059.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491001060.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491002061.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491002062.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491003063.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491003064.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491004065.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491004066.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491005067.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491006068.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491007069.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491007070.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491008071.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491008072.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491009073.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491009074.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491010075.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491010076.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491011077.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491011078.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491012079.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491013080.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491014081.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491014082.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491015083.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491015084.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491016085.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491016086.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491017087.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491017088.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491018089.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491018090.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491019091.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491019092.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491020093.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491020094.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491021095.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491021096.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491022097.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491023098.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491023099.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491024100.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491024101.dcm break DICOMRead.c:5228 ERROR: GetDICOMInfo(): dcmGetDWIParams() 9 DICOM File: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316491025102.dcm break DICOMRead.c:5228 First Sorting Computing Slice Direction Vs: -0.99478 0.102 0.0033 Vs: -0.994779 0.102 0.0033 Second Sorting IsDWI = 0, IsPhilipsDWI = 0 Counting frames nframes = 1 nslices = 82 ndcmfiles = 82 PE Dir = (dicom read) CTABreadASCII(/Applications/freesurfer/FreeSurferColorLUT.txt): could not open file Too many open files ERROR: reading /Applications/freesurfer/FreeSurferColorLUT.txt Loading pixel data ERROR: /Users/georgina/Downloads/HD/HC21/1.3.46.670589.11.38127.5.0.4944.2019102316490992042.dcm is not a dicom file 70092 Requested element (18 9089) not found in DCM_GetElementVM

2 1

FreeSurfer Coordinate Systems
by Kim, Gwang-Won 27 Oct '20

27 Oct '20

Dear sir, I’m going to process as follows: I have a point on the surface ("Vertex RAS" in tksurfer) and want to compute the Scanner RAS in orig.mgz that corresponds to this point: ScannerRAS = Norig*inv(Torig)*[tkrR tkrA tkrS 1] If vertex RAS is x=10 y=20 z=30, [tkrR tkrA tkrS 1] is [10 0 0 1; 0 20 0 1; 0 0 30 1], right? I don’t know how I use [tkrR tkrA tkrS 1]. Please let me know. Thanks

2 1

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