External Email - Use Caution
Hi FreeSurfer developers,
I have Freesurfer anatomical data from recon-all, and pre-processed functional data in NifTI format from FSL and you would like to use FsFast to align that data. What would be the best way to do that using FsFast? Is this possible?
Thanks.
Sure, try the bbregister tool
Cheers Bruce
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Karan Desai Sent: Tuesday, December 1, 2020 10:46 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Aligning functional and structural scans with FsFast
External Email - Use Caution Hi FreeSurfer developers,
I have Freesurfer anatomical data from recon-all, and pre-processed functional data in NifTI format from FSL and you would like to use FsFast to align that data. What would be the best way to do that using FsFast? Is this possible?
Thanks.
Do you mean you want to register the fMRI data to the anatomical? If so, use bbregister. If you've run the fMRI through FEAT, then pass the template to the --mov flag
On 12/1/2020 10:46 PM, Karan Desai wrote:
External Email - Use Caution
Hi FreeSurfer developers,
I have Freesurfer anatomical data from recon-all, and pre-processed functional data in NifTI format from FSL and you would like to use FsFast to align that data. What would be the best way to do that using FsFast? Is this possible?
Thanks.
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Fischl, Bruce -
Greve, Douglas N.,Ph.D. -
Karan Desai