loading surfaces in freeview - Freesurfer

13 Aug 2010


      Hi,
when I try to load my own generated surfaces in freeview (e.g.  
generated from cerebellum), I am getting the following printed errors  
even though it did save out the images I want. Seems like freeview is  
assuming that ?h.inflated, etc has the same dimensions as the surfaces  
I am loading.
freeview -v mri/norm.mgz:opacity=0.5 -f surf/lh.cerebellum_gm_surf -f  
surf/rh.cerebellum_gm_surf -ss test.png -slice 128 128 60
mrisReadTriangleFile(surf/lh.white): surface doesn't match surf/ 
lh.cerebellum_gm_surf
No such file or directory
mrisReadTriangleFile failed.
No such file or directory
could not load surface from white
mrisReadTriangleFile(surf/lh.pial): surface doesn't match surf/ 
lh.cerebellum_gm_surf
No such file or directory
mrisReadTriangleFile failed.
No such file or directory
could not load surface from pial
mrisReadTriangleFile(surf/lh.orig): surface doesn't match surf/ 
lh.cerebellum_gm_surf
No such file or directory
mrisReadTriangleFile failed.
No such file or directory
could not load surface from orig
mrisReadTriangleFile(surf/lh.inflated): surface doesn't match surf/ 
lh.cerebellum_gm_surf
No such file or directory
mrisReadTriangleFile failed.
No such file or directory
could not load surface from inflated
MRISreadNewCurvature: incompatible vertex number in file surf/lh.curv
No such file or directory
could not read curvature from curv
mrisReadTriangleFile(surf/rh.white): surface doesn't match surf/ 
rh.cerebellum_gm_surf
No such file or directory
mrisReadTriangleFile failed.
No such file or directory
could not load surface from white
mrisReadTriangleFile(surf/rh.pial): surface doesn't match surf/ 
rh.cerebellum_gm_surf
No such file or directory
mrisReadTriangleFile failed.
No such file or directory
could not load surface from pial
mrisReadTriangleFile(surf/rh.orig): surface doesn't match surf/ 
rh.cerebellum_gm_surf
No such file or directory
mrisReadTriangleFile failed.
No such file or directory
could not load surface from orig
mrisReadTriangleFile(surf/rh.inflated): surface doesn't match surf/ 
rh.cerebellum_gm_surf
No such file or directory
mrisReadTriangleFile failed.
No such file or directory
could not load surface from inflated
MRISreadNewCurvature: incompatible vertex number in file surf/rh.curv
No such file or directory
could not read curvature from curv
--Thomas